Results 101 - 120 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 130000 | 0.66 | 0.873755 |
Target: 5'- gCGCCgGCgGCGGc-GCGCaaCGGCCg -3' miRNA: 3'- aGCGGaCGgCGUCaaUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129830 | 0.68 | 0.751863 |
Target: 5'- cCGCCUGCUGCuGggGCccgugGC-CGuGCCCu -3' miRNA: 3'- aGCGGACGGCGuCaaUG-----CGaGC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129797 | 0.69 | 0.724129 |
Target: 5'- gCGCC-GCCGCgauggagaacuGGUcgGCGCUCGaGCUCc -3' miRNA: 3'- aGCGGaCGGCG-----------UCAa-UGCGAGC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129775 | 0.66 | 0.866774 |
Target: 5'- gCGCCUGucCCGCGcacgUGCGCgccgaGGCCg -3' miRNA: 3'- aGCGGAC--GGCGUca--AUGCGag---CCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129717 | 0.68 | 0.796091 |
Target: 5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3' miRNA: 3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 128360 | 0.74 | 0.416253 |
Target: 5'- gCGCCUGCUGgAGUcGCGCUuccagcgCGaGCCCa -3' miRNA: 3'- aGCGGACGGCgUCAaUGCGA-------GC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 127028 | 0.73 | 0.504627 |
Target: 5'- aCGCC-GCCGCGGUgcccgucGCGCU-GGCCg -3' miRNA: 3'- aGCGGaCGGCGUCAa------UGCGAgCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 125611 | 0.68 | 0.78748 |
Target: 5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3' miRNA: 3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 124418 | 0.66 | 0.859602 |
Target: 5'- aUCGCCUGCacgGCAGcgGCgGCggaggcagCGGCgCg -3' miRNA: 3'- -AGCGGACGg--CGUCaaUG-CGa-------GCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 124188 | 0.68 | 0.78748 |
Target: 5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3' miRNA: 3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 123608 | 0.66 | 0.880543 |
Target: 5'- -gGCCacgGCCGCG---GCGCUgGGgCCg -3' miRNA: 3'- agCGGa--CGGCGUcaaUGCGAgCCgGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 123443 | 0.74 | 0.442398 |
Target: 5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3' miRNA: 3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 123394 | 0.67 | 0.821094 |
Target: 5'- gCGCCgcUGCCGUAcUU-CGUacagCGGCCCg -3' miRNA: 3'- aGCGG--ACGGCGUcAAuGCGa---GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 121784 | 0.71 | 0.618534 |
Target: 5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3' miRNA: 3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 121044 | 0.66 | 0.873755 |
Target: 5'- cUCGUC-GCCGC---UGCGC-CGGUCCc -3' miRNA: 3'- -AGCGGaCGGCGucaAUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 120486 | 0.68 | 0.769892 |
Target: 5'- aUGCaCUGCCaGguGUUGCGCcUGGUCa -3' miRNA: 3'- aGCG-GACGG-CguCAAUGCGaGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 120004 | 0.72 | 0.523107 |
Target: 5'- gCGCCgcugGCUGUAGUUGaucaGgUCGGCCUu -3' miRNA: 3'- aGCGGa---CGGCGUCAAUg---CgAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 119187 | 0.66 | 0.866774 |
Target: 5'- aCGCC-GCCGCcc--ACGCcgCGGCgCCg -3' miRNA: 3'- aGCGGaCGGCGucaaUGCGa-GCCG-GG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 118316 | 0.67 | 0.837005 |
Target: 5'- -gGCCUGcCCGCcGccGCGUU-GGCCCu -3' miRNA: 3'- agCGGAC-GGCGuCaaUGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 118176 | 0.66 | 0.864642 |
Target: 5'- gCGCaCcGCCGUGGUUcuugagcuuuuuccGCGCcCGGCCg -3' miRNA: 3'- aGCG-GaCGGCGUCAA--------------UGCGaGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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