miRNA display CGI


Results 121 - 140 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 118039 0.66 0.859602
Target:  5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 117636 0.67 0.821094
Target:  5'- gCGCCguagcgggGaCCGCGGgUugGCgacUGGCCCc -3'
miRNA:   3'- aGCGGa-------C-GGCGUCaAugCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 117147 0.72 0.523107
Target:  5'- cCGCCacGCCGCAGc-GCGC-CGGCUCc -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 116866 0.67 0.82913
Target:  5'- aCGaCCUGCgcgCGCAGUgGCGCggcugcggCGGCgCg -3'
miRNA:   3'- aGC-GGACG---GCGUCAaUGCGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 116780 0.7 0.637921
Target:  5'- cCGCC-GCCGCGGc-ACGCU-GGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 116636 0.68 0.760929
Target:  5'- aCGUCgcGCgGCAGcaGCaGCUCGGCCUc -3'
miRNA:   3'- aGCGGa-CGgCGUCaaUG-CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 114406 0.69 0.733455
Target:  5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 113192 0.67 0.804568
Target:  5'- gUGCCcgucuucgUGCacgagcaGCAGUaccUGCGCUCGGgCCu -3'
miRNA:   3'- aGCGG--------ACGg------CGUCA---AUGCGAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 113129 0.73 0.504627
Target:  5'- -gGCCaGCCGCGGgaGCagcuggggcaGCUCGGCCa -3'
miRNA:   3'- agCGGaCGGCGUCaaUG----------CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 113097 0.66 0.873755
Target:  5'- cCGCCgUGgUGCAGgaGCGgcuCUCGGgCCa -3'
miRNA:   3'- aGCGG-ACgGCGUCaaUGC---GAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 112698 0.67 0.837005
Target:  5'- cCGCCUggGCCGCcugAGcggGCG-UCGGUCCg -3'
miRNA:   3'- aGCGGA--CGGCG---UCaa-UGCgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 112408 0.66 0.873755
Target:  5'- gCGCCgaccgGCCGCcuuucGGaccgACGCccgcucaggCGGCCCa -3'
miRNA:   3'- aGCGGa----CGGCG-----UCaa--UGCGa--------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 109977 0.66 0.873755
Target:  5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3'
miRNA:   3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 109628 0.68 0.786612
Target:  5'- cUGCCUGCCGCugg-ACGaguccuuCUCGGCgCu -3'
miRNA:   3'- aGCGGACGGCGucaaUGC-------GAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 106436 0.66 0.883203
Target:  5'- gUCGCUggcgaagcGCaCGCAGUaGCGCauguugagcgacuucUCGGCCa -3'
miRNA:   3'- -AGCGGa-------CG-GCGUCAaUGCG---------------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 105861 0.66 0.859602
Target:  5'- gCGCCUGa-GCGGcUGCGC-CGGCg- -3'
miRNA:   3'- aGCGGACggCGUCaAUGCGaGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 105174 0.66 0.859602
Target:  5'- aCGCC-GCCG-----ACGCUgGGCCCc -3'
miRNA:   3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 105005 0.68 0.751863
Target:  5'- uUCG-CUGCUGCAGgagcgggaacgggaGCGCUucgaggaCGGCCCg -3'
miRNA:   3'- -AGCgGACGGCGUCaa------------UGCGA-------GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.