miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 138058 0.71 0.599184
Target:  5'- gUCGCCcgcgaccGCCGCGGacagcugagGCGCU-GGCCCu -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 121784 0.71 0.618534
Target:  5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3'
miRNA:   3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 196451 0.69 0.715675
Target:  5'- cCGgCUGCCGCGcgaaccuccgcugGCaCUCGGCCCg -3'
miRNA:   3'- aGCgGACGGCGUcaa----------UGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 190042 0.69 0.717558
Target:  5'- gUCGCCgaucgaccaggaccGCCGCgcGGUcuucacgUACGUUCuGGCCCg -3'
miRNA:   3'- -AGCGGa-------------CGGCG--UCA-------AUGCGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 53175 0.69 0.724129
Target:  5'- cCGCCcucGCCGaugaagauggcCAGcgGCGCgCGGCCCg -3'
miRNA:   3'- aGCGGa--CGGC-----------GUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 55606 0.69 0.733455
Target:  5'- cUCGUCguacaCGCAGUccCGCgCGGCCCa -3'
miRNA:   3'- -AGCGGacg--GCGUCAauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 114406 0.69 0.733455
Target:  5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 162589 0.69 0.733455
Target:  5'- cUGCCgGCUGCGGUggcacuCGCUCGacaGCCUc -3'
miRNA:   3'- aGCGGaCGGCGUCAau----GCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 196068 0.69 0.733455
Target:  5'- cCGCCUuCCGCGGUc-CGuCUCGGCguCCa -3'
miRNA:   3'- aGCGGAcGGCGUCAauGC-GAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 226839 0.69 0.714732
Target:  5'- cUCGCCcGCCGCc---GCGCcgggcaGGCCCa -3'
miRNA:   3'- -AGCGGaCGGCGucaaUGCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74617 0.69 0.710955
Target:  5'- cUCGCC-GCCGCgccaacagcgggguGGUgcgcgGgacccuggagcgcCGCUCGGCCCu -3'
miRNA:   3'- -AGCGGaCGGCG--------------UCAa----U-------------GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85385 0.71 0.618534
Target:  5'- cCGCCU-CacaaGCGGcUGCGCUUGGCCg -3'
miRNA:   3'- aGCGGAcGg---CGUCaAUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 96780 0.71 0.618534
Target:  5'- gUCGCCgccgGCagcaGCGGcgGCGCUCGGgCa -3'
miRNA:   3'- -AGCGGa---CGg---CGUCaaUGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 238952 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 116780 0.7 0.637921
Target:  5'- cCGCC-GCCGCGGc-ACGCU-GGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 137157 0.7 0.657291
Target:  5'- cCGCCaugGCCGCGGc--CGCagCGGCCg -3'
miRNA:   3'- aGCGGa--CGGCGUCaauGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145249 0.7 0.676589
Target:  5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3'
miRNA:   3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 225580 0.69 0.699568
Target:  5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3'
miRNA:   3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.