miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 129830 0.68 0.751863
Target:  5'- cCGCCUGCUGCuGggGCccgugGC-CGuGCCCu -3'
miRNA:   3'- aGCGGACGGCGuCaaUG-----CGaGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 163357 0.68 0.751863
Target:  5'- cCGCCUcaugaaCCGCcagaAGgaGCGC-CGGCCCg -3'
miRNA:   3'- aGCGGAc-----GGCG----UCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 69178 0.68 0.755501
Target:  5'- aCGCCcGCCGCGGccGCGCuagacauacccgacgUCGGCg- -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCG---------------AGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 197278 0.68 0.759123
Target:  5'- cCGCCucUGUCGCGGcgucucucgGCUCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGUCaaug-----CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 203369 0.68 0.760929
Target:  5'- aCGCCUccgcagaaaccGCCGCGGUcGC-CUCaGGUCCc -3'
miRNA:   3'- aGCGGA-----------CGGCGUCAaUGcGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 198183 0.68 0.760929
Target:  5'- aCGCCUacaCCGCGGcugcugACGUguucccagCGGCCCg -3'
miRNA:   3'- aGCGGAc--GGCGUCaa----UGCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 193164 0.68 0.769892
Target:  5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3'
miRNA:   3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5'
13965 3' -59.4 NC_003521.1 + 196068 0.69 0.733455
Target:  5'- cCGCCUuCCGCGGUc-CGuCUCGGCguCCa -3'
miRNA:   3'- aGCGGAcGGCGUCAauGC-GAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 162589 0.69 0.733455
Target:  5'- cUGCCgGCUGCGGUggcacuCGCUCGacaGCCUc -3'
miRNA:   3'- aGCGGaCGGCGUCAau----GCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 114406 0.69 0.733455
Target:  5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 225580 0.69 0.699568
Target:  5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3'
miRNA:   3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 74617 0.69 0.710955
Target:  5'- cUCGCC-GCCGCgccaacagcgggguGGUgcgcgGgacccuggagcgcCGCUCGGCCCu -3'
miRNA:   3'- -AGCGGaCGGCG--------------UCAa----U-------------GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226839 0.69 0.714732
Target:  5'- cUCGCCcGCCGCc---GCGCcgggcaGGCCCa -3'
miRNA:   3'- -AGCGGaCGGCGucaaUGCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 196451 0.69 0.715675
Target:  5'- cCGgCUGCCGCGcgaaccuccgcugGCaCUCGGCCCg -3'
miRNA:   3'- aGCgGACGGCGUcaa----------UGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 190042 0.69 0.717558
Target:  5'- gUCGCCgaucgaccaggaccGCCGCgcGGUcuucacgUACGUUCuGGCCCg -3'
miRNA:   3'- -AGCGGa-------------CGGCG--UCA-------AUGCGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 53175 0.69 0.724129
Target:  5'- cCGCCcucGCCGaugaagauggcCAGcgGCGCgCGGCCCg -3'
miRNA:   3'- aGCGGa--CGGC-----------GUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 55606 0.69 0.733455
Target:  5'- cUCGUCguacaCGCAGUccCGCgCGGCCCa -3'
miRNA:   3'- -AGCGGacg--GCGUCAauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70743 0.68 0.769892
Target:  5'- uUCGuCCaGCUGCAGc-GCGCcgCGGCCg -3'
miRNA:   3'- -AGC-GGaCGGCGUCaaUGCGa-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.