miRNA display CGI


Results 101 - 120 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 190042 0.69 0.717558
Target:  5'- gUCGCCgaucgaccaggaccGCCGCgcGGUcuucacgUACGUUCuGGCCCg -3'
miRNA:   3'- -AGCGGa-------------CGGCG--UCA-------AUGCGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 53175 0.69 0.724129
Target:  5'- cCGCCcucGCCGaugaagauggcCAGcgGCGCgCGGCCCg -3'
miRNA:   3'- aGCGGa--CGGC-----------GUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 55606 0.69 0.733455
Target:  5'- cUCGUCguacaCGCAGUccCGCgCGGCCCa -3'
miRNA:   3'- -AGCGGacg--GCGUCAauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 114406 0.69 0.733455
Target:  5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 162589 0.69 0.733455
Target:  5'- cUGCCgGCUGCGGUggcacuCGCUCGacaGCCUc -3'
miRNA:   3'- aGCGGaCGGCGUCAau----GCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 196068 0.69 0.733455
Target:  5'- cCGCCUuCCGCGGUc-CGuCUCGGCguCCa -3'
miRNA:   3'- aGCGGAcGGCGUCAauGC-GAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 103739 0.73 0.504627
Target:  5'- gCGCgUGCCGCAGUucgucgccUACGCcgUGGCgCg -3'
miRNA:   3'- aGCGgACGGCGUCA--------AUGCGa-GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 113129 0.73 0.504627
Target:  5'- -gGCCaGCCGCGGgaGCagcuggggcaGCUCGGCCa -3'
miRNA:   3'- agCGGaCGGCGUCaaUG----------CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 6657 0.73 0.513833
Target:  5'- gUCGCC-GCCGCGGUa--GCUgCGGCgCCc -3'
miRNA:   3'- -AGCGGaCGGCGUCAaugCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 35910 0.72 0.532444
Target:  5'- cUCGCCUGCCGCucgcaGCGCgugCGGgaCCu -3'
miRNA:   3'- -AGCGGACGGCGucaa-UGCGa--GCCg-GG- -5'
13965 3' -59.4 NC_003521.1 + 219720 0.72 0.555086
Target:  5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3'
miRNA:   3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 200682 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 153377 0.74 0.45975
Target:  5'- cCGCCUGCUGCcGUcGCGCgc-GCCCg -3'
miRNA:   3'- aGCGGACGGCGuCAaUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123443 0.74 0.442398
Target:  5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3'
miRNA:   3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 156162 0.74 0.433862
Target:  5'- -gGCCUGCuCGCAGggcgUGCGCUCGaugaagguGUCCu -3'
miRNA:   3'- agCGGACG-GCGUCa---AUGCGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 128360 0.74 0.416253
Target:  5'- gCGCCUGCUGgAGUcGCGCUuccagcgCGaGCCCa -3'
miRNA:   3'- aGCGGACGGCgUCAaUGCGA-------GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 103571 0.75 0.369204
Target:  5'- gCGCCUGCUGgAGUaccgGCGCguggUGGCCUa -3'
miRNA:   3'- aGCGGACGGCgUCAa---UGCGa---GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32166 0.81 0.179843
Target:  5'- cUGCCUGCCGCAGUUccugUGCcgCGGCCUg -3'
miRNA:   3'- aGCGGACGGCGUCAAu---GCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 151508 0.65 0.885177
Target:  5'- gUCGCCgucccagGCCGCGGaagaagaugaagaagGCGCcgCGGUCa -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------------UGCGa-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.