miRNA display CGI


Results 141 - 160 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 153377 0.74 0.45975
Target:  5'- cCGCCUGCUGCcGUcGCGCgc-GCCCg -3'
miRNA:   3'- aGCGGACGGCGuCAaUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123443 0.74 0.442398
Target:  5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3'
miRNA:   3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 156162 0.74 0.433862
Target:  5'- -gGCCUGCuCGCAGggcgUGCGCUCGaugaagguGUCCu -3'
miRNA:   3'- agCGGACG-GCGUCa---AUGCGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 128360 0.74 0.416253
Target:  5'- gCGCCUGCUGgAGUcGCGCUuccagcgCGaGCCCa -3'
miRNA:   3'- aGCGGACGGCgUCAaUGCGA-------GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 103571 0.75 0.369204
Target:  5'- gCGCCUGCUGgAGUaccgGCGCguggUGGCCUa -3'
miRNA:   3'- aGCGGACGGCgUCAa---UGCGa---GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32166 0.81 0.179843
Target:  5'- cUGCCUGCCGCAGUUccugUGCcgCGGCCUg -3'
miRNA:   3'- aGCGGACGGCGUCAAu---GCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 219720 0.72 0.555086
Target:  5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3'
miRNA:   3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 234469 0.72 0.560792
Target:  5'- cCGUCUucggagGCCGCGcgcgaACGCUUGGCCCg -3'
miRNA:   3'- aGCGGA------CGGCGUcaa--UGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 146685 0.72 0.570337
Target:  5'- aUCGUa-GCCGCgcaGGUUgACGCggCGGCCCa -3'
miRNA:   3'- -AGCGgaCGGCG---UCAA-UGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 34791 0.7 0.666953
Target:  5'- gUCGCC-GCuCGC----GCGuCUCGGCCCg -3'
miRNA:   3'- -AGCGGaCG-GCGucaaUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74854 0.7 0.666953
Target:  5'- gCGCCgGCCGCGGg-ACGC-CGcGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGaGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 73546 0.7 0.657291
Target:  5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3'
miRNA:   3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 140484 0.7 0.637921
Target:  5'- cCGCCaucaUGCUGCAcg-GCGaCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 202363 0.7 0.637921
Target:  5'- gCGCCaGCUGCGGUauuagagGCGC-CGGgCCCc -3'
miRNA:   3'- aGCGGaCGGCGUCAa------UGCGaGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 164016 0.71 0.608851
Target:  5'- cCGCCgugagcGCCGCuGUUGcCGC-CGGCgCCg -3'
miRNA:   3'- aGCGGa-----CGGCGuCAAU-GCGaGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 102610 0.71 0.608851
Target:  5'- gCGCCUGCCGCcaccccgGCG-UCGGCgCCc -3'
miRNA:   3'- aGCGGACGGCGucaa---UGCgAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 91920 0.71 0.599184
Target:  5'- gCGCCagggaGCCGCGGgcACGC-CGGCUUu -3'
miRNA:   3'- aGCGGa----CGGCGUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 154298 0.71 0.596287
Target:  5'- gCGCCUGCCGCGGcaAgagcaugcaccaggUGCUgCGGaCCCg -3'
miRNA:   3'- aGCGGACGGCGUCaaU--------------GCGA-GCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 28759 0.71 0.579921
Target:  5'- cUCGCCacgUGCUGCAGgcuCGaCUCGGUCa -3'
miRNA:   3'- -AGCGG---ACGGCGUCaauGC-GAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.