miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 138080 0.69 0.714732
Target:  5'- gCGCCUuaauaaUGCAGcUGCGCUCGuccGCCCg -3'
miRNA:   3'- aGCGGAcg----GCGUCaAUGCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 131337 0.69 0.733455
Target:  5'- gCGCgaGCCGCGGUcgccgccacCGCguccgaGGCCCg -3'
miRNA:   3'- aGCGgaCGGCGUCAau-------GCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123443 0.74 0.442398
Target:  5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3'
miRNA:   3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 103739 0.73 0.504627
Target:  5'- gCGCgUGCCGCAGUucgucgccUACGCcgUGGCgCg -3'
miRNA:   3'- aGCGgACGGCGUCA--------AUGCGa-GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 219720 0.72 0.555086
Target:  5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3'
miRNA:   3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 28759 0.71 0.579921
Target:  5'- cUCGCCacgUGCUGCAGgcuCGaCUCGGUCa -3'
miRNA:   3'- -AGCGG---ACGGCGUCaauGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 73546 0.7 0.657291
Target:  5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3'
miRNA:   3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 43376 0.7 0.686192
Target:  5'- gCGCUcGCCGCA---GCGCUUGGUCa -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 201943 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 40780 0.67 0.821094
Target:  5'- gUCGCC-GCUGCuggaggaguucgAGaUGCGCUgCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCG------------UCaAUGCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 74442 0.68 0.751863
Target:  5'- gCGCCgggcGCCGCG---GCGCagCGGCCa -3'
miRNA:   3'- aGCGGa---CGGCGUcaaUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 224082 0.68 0.760929
Target:  5'- gCGCCcgcgGUgGCGGcgGCGCa-GGCCCg -3'
miRNA:   3'- aGCGGa---CGgCGUCaaUGCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 131491 0.68 0.778745
Target:  5'- aUCGCC-GUCGCGacgcuGUcucugGCGC-CGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCGU-----CAa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85902 0.68 0.796091
Target:  5'- gCGgCUGCCGgGGgggaggUGCacgaccuCUCGGCCCu -3'
miRNA:   3'- aGCgGACGGCgUCa-----AUGc------GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 77239 0.68 0.796091
Target:  5'- aUCGCC-GCCaGCAucacGCGCaUCGGCCg -3'
miRNA:   3'- -AGCGGaCGG-CGUcaa-UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 75099 0.67 0.812905
Target:  5'- gCGUgaGgCGCGGgacgccgucGCGCUCGGCgCCg -3'
miRNA:   3'- aGCGgaCgGCGUCaa-------UGCGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.