miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 19384 0.68 0.751863
Target:  5'- gUUGCCgaGCaCGCAGUggUACGUgcCGGCCg -3'
miRNA:   3'- -AGCGGa-CG-GCGUCA--AUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 120486 0.68 0.769892
Target:  5'- aUGCaCUGCCaGguGUUGCGCcUGGUCa -3'
miRNA:   3'- aGCG-GACGG-CguCAAUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226335 0.68 0.778745
Target:  5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3'
miRNA:   3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 70402 0.68 0.78748
Target:  5'- gCGCUcGCCGCAGcucgAgGCccugauagCGGCCCu -3'
miRNA:   3'- aGCGGaCGGCGUCaa--UgCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 192301 0.68 0.796091
Target:  5'- gCGUCUGCCGCGc--ACGC-CGGCg- -3'
miRNA:   3'- aGCGGACGGCGUcaaUGCGaGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 75099 0.67 0.812905
Target:  5'- gCGUgaGgCGCGGgacgccgucGCGCUCGGCgCCg -3'
miRNA:   3'- aGCGgaCgGCGUCaa-------UGCGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 43376 0.7 0.686192
Target:  5'- gCGCUcGCCGCA---GCGCUUGGUCa -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 73546 0.7 0.657291
Target:  5'- gCGuCCUGCCGCAGgcagAUGCUgaugaUGGCgCa -3'
miRNA:   3'- aGC-GGACGGCGUCaa--UGCGA-----GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 210114 0.67 0.82913
Target:  5'- gCGCuacgagguagagCUGCCGCaAGUggACGCUCGGaUCUc -3'
miRNA:   3'- aGCG------------GACGGCG-UCAa-UGCGAGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 238713 0.67 0.837005
Target:  5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 56011 0.67 0.840108
Target:  5'- gCGCCUGUCGCugccgcccgcgcgcuGGgagGCGCUgCGcGCCg -3'
miRNA:   3'- aGCGGACGGCG---------------UCaa-UGCGA-GC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 64219 0.66 0.852247
Target:  5'- gCGCCgcGCCaGCAGcuccACGCUCaGCCg -3'
miRNA:   3'- aGCGGa-CGG-CGUCaa--UGCGAGcCGGg -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 123443 0.74 0.442398
Target:  5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3'
miRNA:   3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 103739 0.73 0.504627
Target:  5'- gCGCgUGCCGCAGUucgucgccUACGCcgUGGCgCg -3'
miRNA:   3'- aGCGgACGGCGUCA--------AUGCGa-GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 219720 0.72 0.555086
Target:  5'- gUCGCUcgUGCCGCAGcUgaccgagcugugcgaGCGCUgggauaCGGCCCu -3'
miRNA:   3'- -AGCGG--ACGGCGUCaA---------------UGCGA------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 28759 0.71 0.579921
Target:  5'- cUCGCCacgUGCUGCAGgcuCGaCUCGGUCa -3'
miRNA:   3'- -AGCGG---ACGGCGUCaauGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.