miRNA display CGI


Results 101 - 120 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 34998 0.66 0.866774
Target:  5'- cCGCCUGUCGguaccCGGUguucguggACGCgcaCGGCgCCg -3'
miRNA:   3'- aGCGGACGGC-----GUCAa-------UGCGa--GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 137520 0.66 0.866774
Target:  5'- cCGCuCUGcCCGCuGc--CGCcgUCGGCCCc -3'
miRNA:   3'- aGCG-GAC-GGCGuCaauGCG--AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 66347 0.66 0.873755
Target:  5'- -gGCCcaaCGCAGggcuCGCUCGGCUg -3'
miRNA:   3'- agCGGacgGCGUCaau-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 101776 0.66 0.880543
Target:  5'- gCGCCUGCUGguCGGccGCGUcUGGCCg -3'
miRNA:   3'- aGCGGACGGC--GUCaaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 40780 0.67 0.821094
Target:  5'- gUCGCC-GCUGCuggaggaguucgAGaUGCGCUgCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCG------------UCaAUGCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 145377 0.67 0.821094
Target:  5'- cCaCCUGCCgGUAGUUAgGCgccaGGUCCa -3'
miRNA:   3'- aGcGGACGG-CGUCAAUgCGag--CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 75099 0.67 0.812905
Target:  5'- gCGUgaGgCGCGGgacgccgucGCGCUCGGCgCCg -3'
miRNA:   3'- aGCGgaCgGCGUCaa-------UGCGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 140484 0.7 0.637921
Target:  5'- cCGCCaucaUGCUGCAcg-GCGaCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 65025 0.7 0.676589
Target:  5'- aUCGCCcggUGCCGCGccGgccgGCGuCUUGGCCa -3'
miRNA:   3'- -AGCGG---ACGGCGU--Caa--UGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 151228 0.7 0.690023
Target:  5'- cCGCCagcGCCGC-GUcgcgcgacugcacgaUgaucugaccGCGCUCGGCCCa -3'
miRNA:   3'- aGCGGa--CGGCGuCA---------------A---------UGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 4603 0.69 0.713789
Target:  5'- cCGCCgGCgGCGGUgGCGCcaggcauggacggUCGaGCCCc -3'
miRNA:   3'- aGCGGaCGgCGUCAaUGCG-------------AGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 223015 0.69 0.724129
Target:  5'- aCGCCgugGCCGUAGcccagacgGCGCgcgagaugagCGGCCUc -3'
miRNA:   3'- aGCGGa--CGGCGUCaa------UGCGa---------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 164703 0.69 0.742702
Target:  5'- -gGCCgcgGCCGCGGUgGCGCUgcuagcaccagCGGCg- -3'
miRNA:   3'- agCGGa--CGGCGUCAaUGCGA-----------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 74442 0.68 0.751863
Target:  5'- gCGCCgggcGCCGCG---GCGCagCGGCCa -3'
miRNA:   3'- aGCGGa---CGGCGUcaaUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 138148 0.68 0.769892
Target:  5'- -gGCCgaggcGUCGCGGUccagGCGCUCGGgCg -3'
miRNA:   3'- agCGGa----CGGCGUCAa---UGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 109628 0.68 0.786612
Target:  5'- cUGCCUGCCGCugg-ACGaguccuuCUCGGCgCu -3'
miRNA:   3'- aGCGGACGGCGucaaUGC-------GAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 85902 0.68 0.796091
Target:  5'- gCGgCUGCCGgGGgggaggUGCacgaccuCUCGGCCCu -3'
miRNA:   3'- aGCgGACGGCgUCa-----AUGc------GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 6731 0.67 0.804568
Target:  5'- aCGCCaugcccuggucgUGCCGguGUUu--CUCGGCCg -3'
miRNA:   3'- aGCGG------------ACGGCguCAAugcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 28523 0.66 0.880543
Target:  5'- aUCGCC-GCCGU-GUUcCuCUCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCGuCAAuGcGAGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.