miRNA display CGI


Results 121 - 140 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 113192 0.67 0.804568
Target:  5'- gUGCCcgucuucgUGCacgagcaGCAGUaccUGCGCUCGGgCCu -3'
miRNA:   3'- aGCGG--------ACGg------CGUCA---AUGCGAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 225580 0.69 0.699568
Target:  5'- gUCGuCCUGgCGCucggcggccucGCGCUCGGCCg -3'
miRNA:   3'- -AGC-GGACgGCGucaa-------UGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 223468 0.68 0.796091
Target:  5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3'
miRNA:   3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 221136 0.67 0.804568
Target:  5'- -aGCCacaCGUucuugggaaAGUUGgGCUCGGCCCa -3'
miRNA:   3'- agCGGacgGCG---------UCAAUgCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 4351 0.74 0.433862
Target:  5'- cCGCC-GCCgGCGGUU-CGCUCaucgcGGCCCg -3'
miRNA:   3'- aGCGGaCGG-CGUCAAuGCGAG-----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 64602 0.67 0.804568
Target:  5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3'
miRNA:   3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 43838 0.72 0.521247
Target:  5'- cCGCCgGCCGCGGgcccgucacagGCGCccCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa---------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145249 0.7 0.676589
Target:  5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3'
miRNA:   3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 204141 0.66 0.880543
Target:  5'- gCGCCggaGCC-CGGccucaGCUCGGCCg -3'
miRNA:   3'- aGCGGa--CGGcGUCaaug-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 74617 0.69 0.710955
Target:  5'- cUCGCC-GCCGCgccaacagcgggguGGUgcgcgGgacccuggagcgcCGCUCGGCCCu -3'
miRNA:   3'- -AGCGGaCGGCG--------------UCAa----U-------------GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226839 0.69 0.714732
Target:  5'- cUCGCCcGCCGCc---GCGCcgggcaGGCCCa -3'
miRNA:   3'- -AGCGGaCGGCGucaaUGCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 124188 0.68 0.78748
Target:  5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3'
miRNA:   3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226492 0.68 0.78748
Target:  5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3'
miRNA:   3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 125611 0.68 0.78748
Target:  5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3'
miRNA:   3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 187439 0.68 0.78748
Target:  5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3'
miRNA:   3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70593 0.68 0.796091
Target:  5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3'
miRNA:   3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 129717 0.68 0.796091
Target:  5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 120004 0.72 0.523107
Target:  5'- gCGCCgcugGCUGUAGUUGaucaGgUCGGCCUu -3'
miRNA:   3'- aGCGGa---CGGCGUCAAUg---CgAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.