miRNA display CGI


Results 61 - 80 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 67123 0.66 0.997242
Target:  5'- --cAGCaGcAGCAACAGCaGCgGGCCGCa -3'
miRNA:   3'- gccUUGaC-UCGUUGUUG-CGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 80470 0.66 0.997994
Target:  5'- aGGAA---GGCGGCGACGCCcucgacgacggagGccACCGCg -3'
miRNA:   3'- gCCUUgacUCGUUGUUGCGG-------------U--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 111836 0.66 0.996153
Target:  5'- uGGAGCgugGuGCccAGCAucgucuuuuuccaGCGCCAcGCCGCc -3'
miRNA:   3'- gCCUUGa--CuCG--UUGU-------------UGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 42930 0.66 0.997663
Target:  5'- aGGuGAC-GAGCAACAucCGCU-GCCGCc -3'
miRNA:   3'- gCC-UUGaCUCGUUGUu-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239042 0.66 0.998029
Target:  5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3'
miRNA:   3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5'
13965 5' -51.8 NC_003521.1 + 116633 0.66 0.996761
Target:  5'- uGGAGuucCUcAGCGGCAgcuACGCCGGCCu- -3'
miRNA:   3'- gCCUU---GAcUCGUUGU---UGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 64511 0.66 0.996709
Target:  5'- aCGGAcGCcucaaggccauguUGcGCGACGACGCCGAcgcCCGUc -3'
miRNA:   3'- -GCCU-UG-------------ACuCGUUGUUGCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 73768 0.66 0.997663
Target:  5'- cCGGcACcGGcGuCAugAGCGCCAcGCCGCu -3'
miRNA:   3'- -GCCuUGaCU-C-GUugUUGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 96787 0.66 0.997994
Target:  5'- cCGGcAGC--AGCGGCGGCGCUcgggcacGAUCGCg -3'
miRNA:   3'- -GCC-UUGacUCGUUGUUGCGG-------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 201763 0.66 0.997663
Target:  5'- aGGAGCUggaaaacuacGAGCcguucgccuCGGCGCCAcacCCGCc -3'
miRNA:   3'- gCCUUGA----------CUCGuu-------GUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 18764 0.66 0.998029
Target:  5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3'
miRNA:   3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 198520 0.66 0.995588
Target:  5'- uGGGACggcuaucGCuGCGGCGUCAGCCaGCu -3'
miRNA:   3'- gCCUUGacu----CGuUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 223905 0.66 0.995588
Target:  5'- uGGcAGCUGGGCAggcGCAucguggACGCCuACCa- -3'
miRNA:   3'- gCC-UUGACUCGU---UGU------UGCGGuUGGcg -5'
13965 5' -51.8 NC_003521.1 + 127531 0.66 0.996211
Target:  5'- uGGAA--GAGCAuguGCGGCGgCAGCaCGCc -3'
miRNA:   3'- gCCUUgaCUCGU---UGUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 37106 0.66 0.995588
Target:  5'- aGGuGCUcuacccGGCAcaGCAGCGCCGGCCcGUg -3'
miRNA:   3'- gCCuUGAc-----UCGU--UGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 181214 0.66 0.997242
Target:  5'- aGGAACU--GCG--AugGCCGAUCGCc -3'
miRNA:   3'- gCCUUGAcuCGUugUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 214143 0.66 0.998029
Target:  5'- uGGAGuaGAGCAGCAGgGa--GCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUgCgguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 211099 0.66 0.995588
Target:  5'- aCGGAGg-GAgGgGACgAGCGCCAcggACCGCu -3'
miRNA:   3'- -GCCUUgaCU-CgUUG-UUGCGGU---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.