miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 111836 0.66 0.996153
Target:  5'- uGGAGCgugGuGCccAGCAucgucuuuuuccaGCGCCAcGCCGCc -3'
miRNA:   3'- gCCUUGa--CuCG--UUGU-------------UGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 151257 0.66 0.995588
Target:  5'- uGGGAC--GGCGACGACGagGAgCGCg -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCggUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 184101 0.66 0.995521
Target:  5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3'
miRNA:   3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 131133 0.66 0.998029
Target:  5'- aGGGACaGcGCGACcccucgGCCGAUCGCa -3'
miRNA:   3'- gCCUUGaCuCGUUGuug---CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 127531 0.66 0.996211
Target:  5'- uGGAA--GAGCAuguGCGGCGgCAGCaCGCc -3'
miRNA:   3'- gCCUUgaCUCGU---UGUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 116633 0.66 0.996761
Target:  5'- uGGAGuucCUcAGCGGCAgcuACGCCGGCCu- -3'
miRNA:   3'- gCCUU---GAcUCGUUGU---UGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 25541 0.66 0.995588
Target:  5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 129514 0.66 0.995588
Target:  5'- aGGGAg-GAGCucgAGCGCCGACCa- -3'
miRNA:   3'- gCCUUgaCUCGuugUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 112693 0.66 0.998029
Target:  5'- aGGAGCUccugcuggGGGUGGuCAACGCCcuagagagcguGACCGUc -3'
miRNA:   3'- gCCUUGA--------CUCGUU-GUUGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100867 0.66 0.996761
Target:  5'- cCGGGACUGcuccauGCuGCuGCGUCGACUGa -3'
miRNA:   3'- -GCCUUGACu-----CGuUGuUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 87678 0.66 0.996761
Target:  5'- uGGuuGCUGAGCGugGagGCGCCcgagaggcCCGUg -3'
miRNA:   3'- gCCu-UGACUCGUugU--UGCGGuu------GGCG- -5'
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 64511 0.66 0.996709
Target:  5'- aCGGAcGCcucaaggccauguUGcGCGACGACGCCGAcgcCCGUc -3'
miRNA:   3'- -GCCU-UG-------------ACuCGUUGUUGCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 41381 0.66 0.995588
Target:  5'- uGGAcagcaACUGGGUGAcCAGCaCC-ACCGCg -3'
miRNA:   3'- gCCU-----UGACUCGUU-GUUGcGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 118200 0.66 0.998029
Target:  5'- uCGGGGCcgccGAGCGcGCGGcCGCC-GCCGUc -3'
miRNA:   3'- -GCCUUGa---CUCGU-UGUU-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 135330 0.66 0.997815
Target:  5'- cCGGggUcGGGCGgguugccucccucccGCGcGCGCCGucuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGU---------------UGU-UGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 198520 0.66 0.995588
Target:  5'- uGGGACggcuaucGCuGCGGCGUCAGCCaGCu -3'
miRNA:   3'- gCCUUGacu----CGuUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 147780 0.66 0.996211
Target:  5'- aCGGugUUGaAGCc-CAGCGCCAcCUGCa -3'
miRNA:   3'- -GCCuuGAC-UCGuuGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116759 0.66 0.998029
Target:  5'- aCGuGGCUuGuGCAGCGugGgCCGccGCCGCg -3'
miRNA:   3'- -GCcUUGA-CuCGUUGUugC-GGU--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.