miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 241031 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 47874 0.66 0.997242
Target:  5'- aGGGGCaguagcagcaaGAGCAGCAggaggaggACuCCGACCGCc -3'
miRNA:   3'- gCCUUGa----------CUCGUUGU--------UGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226356 0.66 0.997242
Target:  5'- uGGuaucugUUGGGCGugAcGgGCCGGCCGCg -3'
miRNA:   3'- gCCuu----GACUCGUugU-UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 217314 0.66 0.997242
Target:  5'- aCGGcGCUGGGCuuu-AUGUUGGCCGUg -3'
miRNA:   3'- -GCCuUGACUCGuuguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35136 0.66 0.997663
Target:  5'- cCGcGACUGAGCGcgGguGCGCCA--CGCg -3'
miRNA:   3'- -GCcUUGACUCGU--UguUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 80470 0.66 0.997994
Target:  5'- aGGAA---GGCGGCGACGCCcucgacgacggagGccACCGCg -3'
miRNA:   3'- gCCUUgacUCGUUGUUGCGG-------------U--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31956 0.66 0.996211
Target:  5'- aGGAACaG-GCAcAUggUGCCGuccaGCCGCa -3'
miRNA:   3'- gCCUUGaCuCGU-UGuuGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30574 0.66 0.996761
Target:  5'- uCGGggUaGGGCAGgucCAAgUGCCGuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGUU---GUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 143914 0.66 0.997242
Target:  5'- aGGAGacGGGC-ACGGCGC--GCCGCa -3'
miRNA:   3'- gCCUUgaCUCGuUGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222494 0.66 0.997663
Target:  5'- -cGAACUGGucCAACAGCaCCAcGCCGCu -3'
miRNA:   3'- gcCUUGACUc-GUUGUUGcGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 42930 0.66 0.997663
Target:  5'- aGGuGAC-GAGCAACAucCGCU-GCCGCc -3'
miRNA:   3'- gCC-UUGaCUCGUUGUu-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 112693 0.66 0.998029
Target:  5'- aGGAGCUccugcuggGGGUGGuCAACGCCcuagagagcguGACCGUc -3'
miRNA:   3'- gCCUUGA--------CUCGUU-GUUGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 96787 0.66 0.997994
Target:  5'- cCGGcAGC--AGCGGCGGCGCUcgggcacGAUCGCg -3'
miRNA:   3'- -GCC-UUGacUCGUUGUUGCGG-------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 135330 0.66 0.997815
Target:  5'- cCGGggUcGGGCGgguugccucccucccGCGcGCGCCGucuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGU---------------UGU-UGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 118200 0.66 0.998029
Target:  5'- uCGGGGCcgccGAGCGcGCGGcCGCC-GCCGUc -3'
miRNA:   3'- -GCCUUGa---CUCGU-UGUU-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 140989 0.66 0.998029
Target:  5'- -aGAGCUGgcccucuccAGCAACAAgGCCcagcacguggaGGCCGUa -3'
miRNA:   3'- gcCUUGAC---------UCGUUGUUgCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 131133 0.66 0.998029
Target:  5'- aGGGACaGcGCGACcccucgGCCGAUCGCa -3'
miRNA:   3'- gCCUUGaCuCGUUGuug---CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 18764 0.66 0.998029
Target:  5'- aCGGGucGCUGcuGCGACGGCugguGCCccCCGCc -3'
miRNA:   3'- -GCCU--UGACu-CGUUGUUG----CGGuuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.