miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 64059 0.66 0.995521
Target:  5'- uGGAugucgauGCUGAuCAGCAugccCGCCAGCUGg -3'
miRNA:   3'- gCCU-------UGACUcGUUGUu---GCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 237299 0.66 0.996153
Target:  5'- gCGGcACaGAGCAccGCGauccagcACGCUGAUCGCa -3'
miRNA:   3'- -GCCuUGaCUCGU--UGU-------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 32239 0.66 0.997663
Target:  5'- aGGAGCUGuacauGCGGCugGACGgcaCCAugUGCc -3'
miRNA:   3'- gCCUUGACu----CGUUG--UUGC---GGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 223905 0.66 0.995588
Target:  5'- uGGcAGCUGGGCAggcGCAucguggACGCCuACCa- -3'
miRNA:   3'- gCC-UUGACUCGU---UGU------UGCGGuUGGcg -5'
13965 5' -51.8 NC_003521.1 + 114041 0.66 0.997242
Target:  5'- aGGAACcGAGgAugGagACGCgguGCCGCg -3'
miRNA:   3'- gCCUUGaCUCgUugU--UGCGgu-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 65515 0.66 0.998029
Target:  5'- uCGaGcGCUGucAGCuggGCGACGCCGagACCGUg -3'
miRNA:   3'- -GC-CuUGAC--UCGu--UGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 85520 0.66 0.997242
Target:  5'- gCGGAGC-GGGUAGCcaguuauuugcGCGCCGGCCcCa -3'
miRNA:   3'- -GCCUUGaCUCGUUGu----------UGCGGUUGGcG- -5'
13965 5' -51.8 NC_003521.1 + 224152 0.66 0.997242
Target:  5'- aGGAagaGCcuaugGAGCccGACAACGUggucccgagggaCAGCCGCa -3'
miRNA:   3'- gCCU---UGa----CUCG--UUGUUGCG------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 241031 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 145345 0.66 0.997242
Target:  5'- aGGcGGCUGAGCcACAGguaguCGUCcgAGCCGCc -3'
miRNA:   3'- gCC-UUGACUCGuUGUU-----GCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 217314 0.66 0.997242
Target:  5'- aCGGcGCUGGGCuuu-AUGUUGGCCGUg -3'
miRNA:   3'- -GCCuUGACUCGuuguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 114256 0.66 0.995588
Target:  5'- aGGAGa-GGGUuGCAGCcggugcccgGCCGGCCGCc -3'
miRNA:   3'- gCCUUgaCUCGuUGUUG---------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 233036 0.66 0.996761
Target:  5'- aGcuGCUGAG-GGCAGCGCaGACCGUa -3'
miRNA:   3'- gCcuUGACUCgUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 88451 0.66 0.996211
Target:  5'- aGGAccacCUGAuGCucAGCGACGCCGucACCuGCg -3'
miRNA:   3'- gCCUu---GACU-CG--UUGUUGCGGU--UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 100055 0.66 0.995588
Target:  5'- aGGAggGCUgGGGCGACAACuG-CAACCuGCu -3'
miRNA:   3'- gCCU--UGA-CUCGUUGUUG-CgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 120601 0.66 0.997242
Target:  5'- cCGaAGC--AGCAGCAGCgGCC-ACCGCa -3'
miRNA:   3'- -GCcUUGacUCGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226431 0.66 0.997242
Target:  5'- uGGcccuuCUGcGCGcugaACGACGCCGaguGCCGCc -3'
miRNA:   3'- gCCuu---GACuCGU----UGUUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59695 0.66 0.997242
Target:  5'- ---cGCUGccGGCGGCGGCGCCGcugUCGCg -3'
miRNA:   3'- gccuUGAC--UCGUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 116882 0.66 0.997623
Target:  5'- aGGAACUccaccaccuugucGGGCcGCAGCGaCUugcagggagGGCCGCg -3'
miRNA:   3'- gCCUUGA-------------CUCGuUGUUGC-GG---------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56105 0.66 0.997242
Target:  5'- uGGAcCUGuGCAAgGcCgGCCuGCCGCg -3'
miRNA:   3'- gCCUuGACuCGUUgUuG-CGGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.