miRNA display CGI


Results 141 - 160 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 120601 0.66 0.997242
Target:  5'- cCGaAGC--AGCAGCAGCgGCC-ACCGCa -3'
miRNA:   3'- -GCcUUGacUCGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70127 0.66 0.997623
Target:  5'- uGGcGCUGcGCGgcggccucaucgGCAGCGUCAucgaccuGCCGCu -3'
miRNA:   3'- gCCuUGACuCGU------------UGUUGCGGU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 26528 0.66 0.995588
Target:  5'- cCGGugcCUGGgguGCAGCAGCGCUggcguuccGugCGCg -3'
miRNA:   3'- -GCCuu-GACU---CGUUGUUGCGG--------UugGCG- -5'
13965 5' -51.8 NC_003521.1 + 224152 0.66 0.997242
Target:  5'- aGGAagaGCcuaugGAGCccGACAACGUggucccgagggaCAGCCGCa -3'
miRNA:   3'- gCCU---UGa----CUCG--UUGUUGCG------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 47874 0.66 0.997242
Target:  5'- aGGGGCaguagcagcaaGAGCAGCAggaggaggACuCCGACCGCc -3'
miRNA:   3'- gCCUUGa----------CUCGUUGU--------UGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 217314 0.66 0.997242
Target:  5'- aCGGcGCUGGGCuuu-AUGUUGGCCGUg -3'
miRNA:   3'- -GCCuUGACUCGuuguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204503 0.66 0.997663
Target:  5'- gCGcGAACUGgccuGGCGGCggGugGCCGACgacuCGCa -3'
miRNA:   3'- -GC-CUUGAC----UCGUUG--UugCGGUUG----GCG- -5'
13965 5' -51.8 NC_003521.1 + 132266 0.66 0.997663
Target:  5'- aCGGGAuCUG-GUAcgaauugcGCAGCuCCAGCUGCg -3'
miRNA:   3'- -GCCUU-GACuCGU--------UGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 64059 0.66 0.995521
Target:  5'- uGGAugucgauGCUGAuCAGCAugccCGCCAGCUGg -3'
miRNA:   3'- gCCU-------UGACUcGUUGUu---GCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 75090 0.66 0.998029
Target:  5'- gCGGGACgccgucGCGcuCGGCGCCGuccguCCGCg -3'
miRNA:   3'- -GCCUUGacu---CGUu-GUUGCGGUu----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 17340 0.66 0.998029
Target:  5'- gGGAACgUGGGUcGC--CGCCAGCgGUa -3'
miRNA:   3'- gCCUUG-ACUCGuUGuuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 40769 0.66 0.997663
Target:  5'- uGGAGgaGuucgagauGCGcuGCGGCGCCGuggcgcGCCGCg -3'
miRNA:   3'- gCCUUgaCu-------CGU--UGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 154650 0.66 0.998029
Target:  5'- --uGAUUG-GCGGCAGCGgCGACCGa -3'
miRNA:   3'- gccUUGACuCGUUGUUGCgGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 111506 0.67 0.994884
Target:  5'- cCGccuGCUGGGCGACcucuuccCGCC-GCCGCu -3'
miRNA:   3'- -GCcu-UGACUCGUUGuu-----GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164579 0.67 0.991104
Target:  5'- cCGGuGCUG-GCGagACAguaaccgccACGCCAccgGCCGCc -3'
miRNA:   3'- -GCCuUGACuCGU--UGU---------UGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35298 0.67 0.994091
Target:  5'- aCGGca-UGAGCGu--GC-CCAACCGCg -3'
miRNA:   3'- -GCCuugACUCGUuguUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31760 0.67 0.994091
Target:  5'- aCGG-GCUGGGC--CugUGCCAACcCGCg -3'
miRNA:   3'- -GCCuUGACUCGuuGuuGCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 64813 0.67 0.994091
Target:  5'- uGGugUUGAGCAGCAgcagacggGCGUCGGCgucguCGCg -3'
miRNA:   3'- gCCuuGACUCGUUGU--------UGCGGUUG-----GCG- -5'
13965 5' -51.8 NC_003521.1 + 130988 0.67 0.992103
Target:  5'- uCGGGcCgGAGUcacGACGugGCCAucuccguGCCGCc -3'
miRNA:   3'- -GCCUuGaCUCG---UUGUugCGGU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 223380 0.67 0.994091
Target:  5'- uGGuGCUGcGCGagACGGcCGCCAucCCGCa -3'
miRNA:   3'- gCCuUGACuCGU--UGUU-GCGGUu-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.