miRNA display CGI


Results 161 - 180 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 206865 0.67 0.994884
Target:  5'- gGGAACUccGCucCAGCuGCUcGCCGCg -3'
miRNA:   3'- gCCUUGAcuCGuuGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73711 0.67 0.991104
Target:  5'- uGGAGC---GCAGCGACcCgGGCCGCg -3'
miRNA:   3'- gCCUUGacuCGUUGUUGcGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164579 0.67 0.991104
Target:  5'- cCGGuGCUG-GCGagACAguaaccgccACGCCAccgGCCGCc -3'
miRNA:   3'- -GCCuUGACuCGU--UGU---------UGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 78325 0.67 0.992208
Target:  5'- cCGGucaUGAaaGACGGCGCguACCGCu -3'
miRNA:   3'- -GCCuugACUcgUUGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 157204 0.67 0.994884
Target:  5'- cCGGGuggGAGCGACuccaguccCGCCGucauacgccGCCGCg -3'
miRNA:   3'- -GCCUugaCUCGUUGuu------GCGGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 133000 0.67 0.994884
Target:  5'- cCGGggUUGGGacgggGACAGcCGCCAcCgGCa -3'
miRNA:   3'- -GCCuuGACUCg----UUGUU-GCGGUuGgCG- -5'
13965 5' -51.8 NC_003521.1 + 131849 0.67 0.994884
Target:  5'- aCGuGGGCUGguucaaGGCGGCcACgGCCAucguGCCGCg -3'
miRNA:   3'- -GC-CUUGAC------UCGUUGuUG-CGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 120962 0.67 0.994884
Target:  5'- gGGGGCgGGGCGguuuGCGGucCGCCAGCuCGUc -3'
miRNA:   3'- gCCUUGaCUCGU----UGUU--GCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 142045 0.67 0.992817
Target:  5'- uGGAcucuuuaACcGAGUugaaagacacggugGACGACGUCAACUGCg -3'
miRNA:   3'- gCCU-------UGaCUCG--------------UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55691 0.67 0.994884
Target:  5'- aGGAACUG-GCAGuuGCGCaucCCGUg -3'
miRNA:   3'- gCCUUGACuCGUUguUGCGguuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 46791 0.67 0.994884
Target:  5'- uGGAucaUGAGUuccauggucugGAUGACGCC-GCCGCc -3'
miRNA:   3'- gCCUug-ACUCG-----------UUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 212234 0.67 0.994884
Target:  5'- uGGcGgUGcGCAGCAGCccGCCGuCCGCg -3'
miRNA:   3'- gCCuUgACuCGUUGUUG--CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 197579 0.67 0.994091
Target:  5'- gGGAGCUGGcGCuGCuacuCGCCcuucCCGCu -3'
miRNA:   3'- gCCUUGACU-CGuUGuu--GCGGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 146882 0.67 0.994091
Target:  5'- aGGAagccagacgACggcGGGCAGCGGuaguCGCCGcuuGCCGCg -3'
miRNA:   3'- gCCU---------UGa--CUCGUUGUU----GCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 115839 0.67 0.994091
Target:  5'- aGGcGCUGgcucaggcgGGCGGCGcACGCCucgucaaacacGGCCGCg -3'
miRNA:   3'- gCCuUGAC---------UCGUUGU-UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 193158 0.67 0.994006
Target:  5'- gCGGGggcgucugcugcuGCUGuugcGCAGCugcCGCCAgaGCCGCc -3'
miRNA:   3'- -GCCU-------------UGACu---CGUUGuu-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 144075 0.67 0.993834
Target:  5'- gCGGcGCUGGGCAACGugcugggcuucUGCCucaugcggcugcugGACCGCc -3'
miRNA:   3'- -GCCuUGACUCGUUGUu----------GCGG--------------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 216195 0.67 0.993202
Target:  5'- aGGcGCUGAGCAcCGGCGCgGgguccuccuggcACaCGCa -3'
miRNA:   3'- gCCuUGACUCGUuGUUGCGgU------------UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 143205 0.67 0.993202
Target:  5'- -cGAGcCUGAGCAcgACGACGUgcACUGCa -3'
miRNA:   3'- gcCUU-GACUCGU--UGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222131 0.67 0.992313
Target:  5'- cCGGGAagaaUGAGCucugaugaugguccuGCAGCGCCc-CCGUg -3'
miRNA:   3'- -GCCUUg---ACUCGu--------------UGUUGCGGuuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.