miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 31909 0.73 0.879374
Target:  5'- aGGAACUGcGGCAgGCAGCGCgCGAugacUCGCg -3'
miRNA:   3'- gCCUUGAC-UCGU-UGUUGCG-GUU----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 142280 0.73 0.870005
Target:  5'- uCGG-GCUGGgacccgccgccgcuGCAGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCuUGACU--------------CGUUGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191136 0.73 0.864812
Target:  5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3'
miRNA:   3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 124531 0.73 0.864812
Target:  5'- uGGAGCUGucCucCAGCGCCAGCUuGCg -3'
miRNA:   3'- gCCUUGACucGuuGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 26531 0.73 0.893063
Target:  5'- aCGGAGCcaagGAGCGuCGACGCUuuauGCCaGCg -3'
miRNA:   3'- -GCCUUGa---CUCGUuGUUGCGGu---UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 60327 0.73 0.893063
Target:  5'- aCGGcGCUGAuGCAGCcg-GCCAACCuGCg -3'
miRNA:   3'- -GCCuUGACU-CGUUGuugCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 142926 0.73 0.872199
Target:  5'- uCGcuGCUGA-CGGCGcuGCGCCGACCGCu -3'
miRNA:   3'- -GCcuUGACUcGUUGU--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225867 0.73 0.872199
Target:  5'- uGGGGCUGcaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- gCCUUGAC--UCGUUG--UUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101826 0.73 0.864812
Target:  5'- gCGGAGCgggGGGaCGACGACGCCGucgUCGUc -3'
miRNA:   3'- -GCCUUGa--CUC-GUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 69484 0.73 0.864812
Target:  5'- gCGGAACccGAGCGGCGGCGggaguGCCGCc -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUGCggu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 216833 0.73 0.864812
Target:  5'- aGGAACagGAGCGAUAugaaGCGUCccuGGCCGCu -3'
miRNA:   3'- gCCUUGa-CUCGUUGU----UGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56378 0.73 0.875095
Target:  5'- uGGuGCUGGGCAauacGCGACGCUAcuucgaucugcgcguGCUGCg -3'
miRNA:   3'- gCCuUGACUCGU----UGUUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226641 0.73 0.88633
Target:  5'- aCGGccCU--GCGGCGGCGUCAGCCGCc -3'
miRNA:   3'- -GCCuuGAcuCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 61137 0.73 0.88633
Target:  5'- cCGaGAACUGcGGCAcCAGCaCCAGCUGCg -3'
miRNA:   3'- -GC-CUUGAC-UCGUuGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 65561 0.73 0.88633
Target:  5'- uCGGAGCU--GCGACAGCGCCc-CCaGCa -3'
miRNA:   3'- -GCCUUGAcuCGUUGUUGCGGuuGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 74871 0.73 0.879374
Target:  5'- uGGcGC--GGCGGCGaggcGCGCCGGCCGCg -3'
miRNA:   3'- gCCuUGacUCGUUGU----UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 86957 0.73 0.879374
Target:  5'- cCGGGcaaGGGCGGCAGCGCCAGCgucuucuuucggCGCg -3'
miRNA:   3'- -GCCUugaCUCGUUGUUGCGGUUG------------GCG- -5'
13965 5' -51.8 NC_003521.1 + 19339 0.73 0.879374
Target:  5'- gCGGAACgacAGCGuCAGCGUCugcGCCGCg -3'
miRNA:   3'- -GCCUUGac-UCGUuGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 141135 0.73 0.879374
Target:  5'- aGGg---GGGCGGCGGCGCCucggccgaGACCGCg -3'
miRNA:   3'- gCCuugaCUCGUUGUUGCGG--------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 34493 0.73 0.864812
Target:  5'- gCGGaAGCaGAGCAGCgAGCGCagguagCGGCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUG-UUGCG------GUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.