miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 101826 0.73 0.864812
Target:  5'- gCGGAGCgggGGGaCGACGACGCCGucgUCGUc -3'
miRNA:   3'- -GCCUUGa--CUC-GUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 216833 0.73 0.864812
Target:  5'- aGGAACagGAGCGAUAugaaGCGUCccuGGCCGCu -3'
miRNA:   3'- gCCUUGa-CUCGUUGU----UGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53308 0.73 0.895694
Target:  5'- aGGAGCUGGGCuggacccacuucgacAGCGGCGgCGACCu- -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCgGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 19339 0.73 0.879374
Target:  5'- gCGGAACgacAGCGuCAGCGUCugcGCCGCg -3'
miRNA:   3'- -GCCUUGac-UCGUuGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75878 0.73 0.893063
Target:  5'- uCGGcGACUGAGCcgUGGCGCCGcCCGa -3'
miRNA:   3'- -GCC-UUGACUCGuuGUUGCGGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 117946 0.72 0.905848
Target:  5'- aGGAGgaGAGCAucaucGCGGCGgCGGCCaGCa -3'
miRNA:   3'- gCCUUgaCUCGU-----UGUUGCgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 56706 0.72 0.928614
Target:  5'- gCGGAugacGCUGGucGCGuCGACGUCgAGCCGCg -3'
miRNA:   3'- -GCCU----UGACU--CGUuGUUGCGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 23884 0.72 0.911298
Target:  5'- uGGGuccgGGGCAACAGCGUaugggguCGACCGCc -3'
miRNA:   3'- gCCUuga-CUCGUUGUUGCG-------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 143549 0.72 0.911892
Target:  5'- cCGGcGAC-GAGCAGCAGcCGCCA-UCGCu -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 142126 0.72 0.928614
Target:  5'- uGGAGCUGgaGGCgGACGACGCgGAaaaCGCc -3'
miRNA:   3'- gCCUUGAC--UCG-UUGUUGCGgUUg--GCG- -5'
13965 5' -51.8 NC_003521.1 + 17036 0.72 0.928614
Target:  5'- aGGAGCgacgacaacgGcAGCAccaGCAGCGCCGacgauACCGCu -3'
miRNA:   3'- gCCUUGa---------C-UCGU---UGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 2706 0.72 0.899571
Target:  5'- cCGGAACgccacucGuGCGGgAGCGCCGucACCGCc -3'
miRNA:   3'- -GCCUUGa------CuCGUUgUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 166453 0.72 0.903989
Target:  5'- aGGGcgagccgucgccgcACUGGccguagccgcGCAGCAGCGCCAuccagcggggcGCCGCg -3'
miRNA:   3'- gCCU--------------UGACU----------CGUUGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196634 0.72 0.905848
Target:  5'- gCGGAcuuucucugcGCUcucgcgGAGUaccGACGGCGCCAGCUGCu -3'
miRNA:   3'- -GCCU----------UGA------CUCG---UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63959 0.72 0.899571
Target:  5'- uGGAGCUGcuGGC-GCGGCGCCAuaACCa- -3'
miRNA:   3'- gCCUUGAC--UCGuUGUUGCGGU--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 86307 0.72 0.89893
Target:  5'- gGGaAACUGGGCGugAuucuggcACGUCAGCCGg -3'
miRNA:   3'- gCC-UUGACUCGUugU-------UGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 40468 0.72 0.905848
Target:  5'- gCGGAACgGAuagauguguccGCGGC-GCGCCAcggcGCCGCa -3'
miRNA:   3'- -GCCUUGaCU-----------CGUUGuUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73125 0.72 0.917703
Target:  5'- aCGGAgguGCUGcacggcgggGGCAGCGGCGgCGgcGCCGCc -3'
miRNA:   3'- -GCCU---UGAC---------UCGUUGUUGCgGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 234082 0.72 0.917703
Target:  5'- uGGGACUcGGCGA--GCGCUGGCUGCg -3'
miRNA:   3'- gCCUUGAcUCGUUguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 123917 0.72 0.921075
Target:  5'- gCGGcGCUGuucuccaccaguuGCAGCGGCGCCGAuaGCa -3'
miRNA:   3'- -GCCuUGACu------------CGUUGUUGCGGUUggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.