Results 141 - 160 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 125521 | 0.71 | 0.951767 |
Target: 5'- uGGuGCUGAGgauCGGCAGCGCUucCUGCg -3' miRNA: 3'- gCCuUGACUC---GUUGUUGCGGuuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 220932 | 0.71 | 0.951767 |
Target: 5'- aGGAACaGcAGCAGgauCAGCGCCGAC-GCg -3' miRNA: 3'- gCCUUGaC-UCGUU---GUUGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 149304 | 0.71 | 0.951767 |
Target: 5'- uGGAGC---GCGACGACGC-GGCCGCc -3' miRNA: 3'- gCCUUGacuCGUUGUUGCGgUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 201632 | 0.71 | 0.951767 |
Target: 5'- gCGGAcGCUgaccaaGAGCGACGACGUgAacgaacuggGCCGCg -3' miRNA: 3'- -GCCU-UGA------CUCGUUGUUGCGgU---------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 117577 | 0.71 | 0.947602 |
Target: 5'- cCGGcgucuACUGGGC-GCGGCGCUAcgaccaccuaccGCCGCc -3' miRNA: 3'- -GCCu----UGACUCGuUGUUGCGGU------------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 55448 | 0.71 | 0.951361 |
Target: 5'- uGGAuCUGGGCGGCG-CGCUGgaagaggcacugcGCCGCc -3' miRNA: 3'- gCCUuGACUCGUUGUuGCGGU-------------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 35369 | 0.71 | 0.942755 |
Target: 5'- aGGAACgacGccgagucccccucGGCGAgGACGCgGGCCGCg -3' miRNA: 3'- gCCUUGa--C-------------UCGUUgUUGCGgUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 100687 | 0.71 | 0.943207 |
Target: 5'- uGGugauGCUGAuGCGGaGGCGCC-GCCGCg -3' miRNA: 3'- gCCu---UGACU-CGUUgUUGCGGuUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 6153 | 0.71 | 0.943207 |
Target: 5'- aGGAA--GAGCAGCAACcccuggcgggGCCAGgCGCa -3' miRNA: 3'- gCCUUgaCUCGUUGUUG----------CGGUUgGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 239181 | 0.71 | 0.943207 |
Target: 5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3' miRNA: 3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 168506 | 0.71 | 0.938578 |
Target: 5'- aCGGAGgCgGAGgaCGGCGACGCCAGCagGCu -3' miRNA: 3'- -GCCUU-GaCUC--GUUGUUGCGGUUGg-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 132621 | 0.71 | 0.947602 |
Target: 5'- aCGGcuuccaGACUcGGCGGCGGCGCCAcCgGCg -3' miRNA: 3'- -GCC------UUGAcUCGUUGUUGCGGUuGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 204381 | 0.71 | 0.938578 |
Target: 5'- aGGAGC-GAGCGcaacucgucuccGCGGCccuCCGACCGCg -3' miRNA: 3'- gCCUUGaCUCGU------------UGUUGc--GGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 116399 | 0.71 | 0.938578 |
Target: 5'- uGGAACguugguUGGGUAGCGGCGgCGAUgGCa -3' miRNA: 3'- gCCUUG------ACUCGUUGUUGCgGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 155426 | 0.71 | 0.938578 |
Target: 5'- aGGAGCUGuGCgAGCug-GCCGACcCGCu -3' miRNA: 3'- gCCUUGACuCG-UUGuugCGGUUG-GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 163733 | 0.71 | 0.947602 |
Target: 5'- uCGGGA-UGAGCG---GCGCCGGCgGCa -3' miRNA: 3'- -GCCUUgACUCGUuguUGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 86207 | 0.71 | 0.938578 |
Target: 5'- uGGAgGCgaaGGGCGGCGgcACGCCGGCgGCc -3' miRNA: 3'- gCCU-UGa--CUCGUUGU--UGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 43804 | 0.71 | 0.951361 |
Target: 5'- gGGGGCcgccaUGucGCAGCAGCcgggucagccgccGCCGGCCGCg -3' miRNA: 3'- gCCUUG-----ACu-CGUUGUUG-------------CGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 104691 | 0.71 | 0.933714 |
Target: 5'- gGGGGCcgUGGGCGGCGucgACGUgcccuCGACCGCg -3' miRNA: 3'- gCCUUG--ACUCGUUGU---UGCG-----GUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 216263 | 0.71 | 0.943207 |
Target: 5'- aGGAggccGCcGAGUAGUAGCGCCAGCuCGUg -3' miRNA: 3'- gCCU----UGaCUCGUUGUUGCGGUUG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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