miRNA display CGI


Results 61 - 80 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 208597 0.74 0.857217
Target:  5'- aCGGcGACUGAGUuuGCGGCGgCCAuagccagucACCGCg -3'
miRNA:   3'- -GCC-UUGACUCGu-UGUUGC-GGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 163775 0.74 0.857217
Target:  5'- gCGGcAACaacGGUAGCGGCGCCAccACCGCc -3'
miRNA:   3'- -GCC-UUGac-UCGUUGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 131346 0.74 0.857217
Target:  5'- cCGGAGCccgcgcGAGCcGCGGuCGCCGccACCGCg -3'
miRNA:   3'- -GCCUUGa-----CUCGuUGUU-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 139642 0.74 0.857217
Target:  5'- gCGGGGCcaaGAGCAcgGCGcucuuCGCCAGCUGCu -3'
miRNA:   3'- -GCCUUGa--CUCGU--UGUu----GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 186630 0.74 0.857217
Target:  5'- aCGGGGCgauGGUuauCGACGCCuGCCGCa -3'
miRNA:   3'- -GCCUUGac-UCGuu-GUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191136 0.73 0.864812
Target:  5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3'
miRNA:   3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 124531 0.73 0.864812
Target:  5'- uGGAGCUGucCucCAGCGCCAGCUuGCg -3'
miRNA:   3'- gCCUUGACucGuuGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 34493 0.73 0.864812
Target:  5'- gCGGaAGCaGAGCAGCgAGCGCagguagCGGCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUG-UUGCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101826 0.73 0.864812
Target:  5'- gCGGAGCgggGGGaCGACGACGCCGucgUCGUc -3'
miRNA:   3'- -GCCUUGa--CUC-GUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 216833 0.73 0.864812
Target:  5'- aGGAACagGAGCGAUAugaaGCGUCccuGGCCGCu -3'
miRNA:   3'- gCCUUGa-CUCGUUGU----UGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218673 0.73 0.864812
Target:  5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3'
miRNA:   3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 44141 0.73 0.864812
Target:  5'- cCGGuAGCgUGGGCGACGGCccgggaGCCGGCCGg -3'
miRNA:   3'- -GCC-UUG-ACUCGUUGUUG------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 69484 0.73 0.864812
Target:  5'- gCGGAACccGAGCGGCGGCGggaguGCCGCc -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUGCggu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 142280 0.73 0.870005
Target:  5'- uCGG-GCUGGgacccgccgccgcuGCAGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCuUGACU--------------CGUUGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 175597 0.73 0.87147
Target:  5'- gCGGcagugacGACUGAGCGACAACuacCCuccACCGCu -3'
miRNA:   3'- -GCC-------UUGACUCGUUGUUGc--GGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117375 0.73 0.872199
Target:  5'- gCGGcGGCUGAGCGGCGgagGCGgCCucguCCGCu -3'
miRNA:   3'- -GCC-UUGACUCGUUGU---UGC-GGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 225867 0.73 0.872199
Target:  5'- uGGGGCUGcaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- gCCUUGAC--UCGUUG--UUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 142926 0.73 0.872199
Target:  5'- uCGcuGCUGA-CGGCGcuGCGCCGACCGCu -3'
miRNA:   3'- -GCcuUGACUcGUUGU--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56378 0.73 0.875095
Target:  5'- uGGuGCUGGGCAauacGCGACGCUAcuucgaucugcgcguGCUGCg -3'
miRNA:   3'- gCCuUGACUCGU----UGUUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164426 0.73 0.879374
Target:  5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3'
miRNA:   3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.