miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 141952 0.73 0.879374
Target:  5'- uGGGcgcccaccuGCUGGGCGACgAGCGUCAggaGCUGCa -3'
miRNA:   3'- gCCU---------UGACUCGUUG-UUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196695 0.73 0.879374
Target:  5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3'
miRNA:   3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5'
13965 5' -51.8 NC_003521.1 + 140899 0.73 0.879374
Target:  5'- gCGGGAUUacGCccugcGCAACGCCGAUCGCg -3'
miRNA:   3'- -GCCUUGAcuCGu----UGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 141135 0.73 0.879374
Target:  5'- aGGg---GGGCGGCGGCGCCucggccgaGACCGCg -3'
miRNA:   3'- gCCuugaCUCGUUGUUGCGG--------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164426 0.73 0.879374
Target:  5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3'
miRNA:   3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 74575 0.73 0.879374
Target:  5'- gCGGcGACgGAGCGGCGGCGCgGcgucCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUUGCGgUu---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 31909 0.73 0.879374
Target:  5'- aGGAACUGcGGCAgGCAGCGCgCGAugacUCGCg -3'
miRNA:   3'- gCCUUGAC-UCGU-UGUUGCG-GUU----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 86957 0.73 0.879374
Target:  5'- cCGGGcaaGGGCGGCAGCGCCAGCgucuucuuucggCGCg -3'
miRNA:   3'- -GCCUugaCUCGUUGUUGCGGUUG------------GCG- -5'
13965 5' -51.8 NC_003521.1 + 74871 0.73 0.879374
Target:  5'- uGGcGC--GGCGGCGaggcGCGCCGGCCGCg -3'
miRNA:   3'- gCCuUGacUCGUUGU----UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 125626 0.73 0.885644
Target:  5'- gCGGAcuGCgacGAGCGcggacgaACAGCGUgGGCCGCg -3'
miRNA:   3'- -GCCU--UGa--CUCGU-------UGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 61137 0.73 0.88633
Target:  5'- cCGaGAACUGcGGCAcCAGCaCCAGCUGCg -3'
miRNA:   3'- -GC-CUUGAC-UCGUuGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226641 0.73 0.88633
Target:  5'- aCGGccCU--GCGGCGGCGUCAGCCGCc -3'
miRNA:   3'- -GCCuuGAcuCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 111197 0.73 0.88633
Target:  5'- gCGGAcgguggGCUGGGCGAUGGCGCCGGaaaGUg -3'
miRNA:   3'- -GCCU------UGACUCGUUGUUGCGGUUgg-CG- -5'
13965 5' -51.8 NC_003521.1 + 65561 0.73 0.88633
Target:  5'- uCGGAGCU--GCGACAGCGCCc-CCaGCa -3'
miRNA:   3'- -GCCUUGAcuCGUUGUUGCGGuuGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 65635 0.73 0.88905
Target:  5'- aGGAGCUGAcgcGCGccagccaggaccuggAgAACGCCAuCCGCg -3'
miRNA:   3'- gCCUUGACU---CGU---------------UgUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 103326 0.73 0.893063
Target:  5'- aGGcGCUGAcGCGcCAGCGCCGugCGg -3'
miRNA:   3'- gCCuUGACU-CGUuGUUGCGGUugGCg -5'
13965 5' -51.8 NC_003521.1 + 109494 0.73 0.893063
Target:  5'- aGGcGCUccagcGAGUggUcGCGCCGGCCGCu -3'
miRNA:   3'- gCCuUGA-----CUCGuuGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 119586 0.73 0.893063
Target:  5'- aGGAacacGCUGGGCGgcggguGCAGCGUCucguGCUGCa -3'
miRNA:   3'- gCCU----UGACUCGU------UGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60327 0.73 0.893063
Target:  5'- aCGGcGCUGAuGCAGCcg-GCCAACCuGCg -3'
miRNA:   3'- -GCCuUGACU-CGUUGuugCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 26531 0.73 0.893063
Target:  5'- aCGGAGCcaagGAGCGuCGACGCUuuauGCCaGCg -3'
miRNA:   3'- -GCCUUGa---CUCGUuGUUGCGGu---UGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.