miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 119586 0.73 0.893063
Target:  5'- aGGAacacGCUGGGCGgcggguGCAGCGUCucguGCUGCa -3'
miRNA:   3'- gCCU----UGACUCGU------UGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 109494 0.73 0.893063
Target:  5'- aGGcGCUccagcGAGUggUcGCGCCGGCCGCu -3'
miRNA:   3'- gCCuUGA-----CUCGuuGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225214 0.73 0.893063
Target:  5'- aCGGAGCUGGugcucuGUAugGGCGgCAGCaCGCg -3'
miRNA:   3'- -GCCUUGACU------CGUugUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 109303 0.73 0.893063
Target:  5'- uGGAcGCUG-GCAACAACGUgGugguacccucGCCGCg -3'
miRNA:   3'- gCCU-UGACuCGUUGUUGCGgU----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53308 0.73 0.895694
Target:  5'- aGGAGCUGGGCuggacccacuucgacAGCGGCGgCGACCu- -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCgGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 86307 0.72 0.89893
Target:  5'- gGGaAACUGGGCGugAuucuggcACGUCAGCCGg -3'
miRNA:   3'- gCC-UUGACUCGUugU-------UGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 85679 0.72 0.899571
Target:  5'- gGGGGCUGGGCAcCGGagGCCuGCUGCc -3'
miRNA:   3'- gCCUUGACUCGUuGUUg-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215012 0.72 0.899571
Target:  5'- aGGAAgagGAGaCGGCGGCGCUGACCGa -3'
miRNA:   3'- gCCUUga-CUC-GUUGUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 63959 0.72 0.899571
Target:  5'- uGGAGCUGcuGGC-GCGGCGCCAuaACCa- -3'
miRNA:   3'- gCCUUGAC--UCGuUGUUGCGGU--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 2706 0.72 0.899571
Target:  5'- cCGGAACgccacucGuGCGGgAGCGCCGucACCGCc -3'
miRNA:   3'- -GCCUUGa------CuCGUUgUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 79909 0.72 0.899571
Target:  5'- uCGccGCUGcAGCAGCAgacgACGCCGaggcGCCGCg -3'
miRNA:   3'- -GCcuUGAC-UCGUUGU----UGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 78871 0.72 0.899571
Target:  5'- aCGaGACgggGGGUggUAGCGCCGACgGCg -3'
miRNA:   3'- -GCcUUGa--CUCGuuGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 56705 0.72 0.899571
Target:  5'- uCGGAcCUGGGCcACGAgGCggccuuCGACCGCg -3'
miRNA:   3'- -GCCUuGACUCGuUGUUgCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4645 0.72 0.899571
Target:  5'- gCGGGugAgUGAGCgAGCGggACGCgGGCCGCg -3'
miRNA:   3'- -GCCU--UgACUCG-UUGU--UGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 166453 0.72 0.903989
Target:  5'- aGGGcgagccgucgccgcACUGGccguagccgcGCAGCAGCGCCAuccagcggggcGCCGCg -3'
miRNA:   3'- gCCU--------------UGACU----------CGUUGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 189045 0.72 0.905848
Target:  5'- gGGGACccagacGAGCAGCAGCGgCAGaugaCGCg -3'
miRNA:   3'- gCCUUGa-----CUCGUUGUUGCgGUUg---GCG- -5'
13965 5' -51.8 NC_003521.1 + 40468 0.72 0.905848
Target:  5'- gCGGAACgGAuagauguguccGCGGC-GCGCCAcggcGCCGCa -3'
miRNA:   3'- -GCCUUGaCU-----------CGUUGuUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117946 0.72 0.905848
Target:  5'- aGGAGgaGAGCAucaucGCGGCGgCGGCCaGCa -3'
miRNA:   3'- gCCUUgaCUCGU-----UGUUGCgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 196634 0.72 0.905848
Target:  5'- gCGGAcuuucucugcGCUcucgcgGAGUaccGACGGCGCCAGCUGCu -3'
miRNA:   3'- -GCCU----------UGA------CUCG---UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 23884 0.72 0.911298
Target:  5'- uGGGuccgGGGCAACAGCGUaugggguCGACCGCc -3'
miRNA:   3'- gCCUuga-CUCGUUGUUGCG-------GUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.