miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 143549 0.72 0.911892
Target:  5'- cCGGcGAC-GAGCAGCAGcCGCCA-UCGCu -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 22753 0.72 0.911892
Target:  5'- uGGucaugacGCUGAaaccuuGCGAUAGCGCCAcCCGCu -3'
miRNA:   3'- gCCu------UGACU------CGUUGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 169213 0.72 0.911892
Target:  5'- gGGAGCgacGGCGACAGCGgCGGCCcuGCc -3'
miRNA:   3'- gCCUUGac-UCGUUGUUGCgGUUGG--CG- -5'
13965 5' -51.8 NC_003521.1 + 195539 0.72 0.911892
Target:  5'- aGGGAgUGAGCuuuauaGACGGCGUCAuCCGUc -3'
miRNA:   3'- gCCUUgACUCG------UUGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 118358 0.72 0.911892
Target:  5'- uGGucgUGGGCGACGGCGCC-GCCGa -3'
miRNA:   3'- gCCuugACUCGUUGUUGCGGuUGGCg -5'
13965 5' -51.8 NC_003521.1 + 76885 0.72 0.911892
Target:  5'- gCGGAACggcgGGGCGGCggUGgUAGCgGCg -3'
miRNA:   3'- -GCCUUGa---CUCGUUGuuGCgGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 234082 0.72 0.917703
Target:  5'- uGGGACUcGGCGA--GCGCUGGCUGCg -3'
miRNA:   3'- gCCUUGAcUCGUUguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 36477 0.72 0.917703
Target:  5'- uCGGggUccaUGuGGCGACAGCGUUugAGCCGCu -3'
miRNA:   3'- -GCCuuG---AC-UCGUUGUUGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 69777 0.72 0.917703
Target:  5'- gCGGuGCUGGGCcuCAACGCgGcCUGCg -3'
miRNA:   3'- -GCCuUGACUCGuuGUUGCGgUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73125 0.72 0.917703
Target:  5'- aCGGAgguGCUGcacggcgggGGCAGCGGCGgCGgcGCCGCc -3'
miRNA:   3'- -GCCU---UGAC---------UCGUUGUUGCgGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 17759 0.72 0.917703
Target:  5'- gGGAACUG-GCcgUAcCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGACuCGuuGUuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 123917 0.72 0.921075
Target:  5'- gCGGcGCUGuucuccaccaguuGCAGCGGCGCCGAuaGCa -3'
miRNA:   3'- -GCCuUGACu------------CGUUGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 152437 0.72 0.921075
Target:  5'- aCGGuccagucgccgauGCUGAGCAugAGCGaguACCGCg -3'
miRNA:   3'- -GCCu------------UGACUCGUugUUGCgguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 128465 0.72 0.921629
Target:  5'- gCGGAucacguccaUGGGCAGCGgcgugaggcugugcGCGCCGGCCuGCg -3'
miRNA:   3'- -GCCUug-------ACUCGUUGU--------------UGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 33514 0.72 0.923277
Target:  5'- cCGGccuGCUG-GCGugugccagcuCAACGCCGGCUGCa -3'
miRNA:   3'- -GCCu--UGACuCGUu---------GUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101247 0.72 0.928614
Target:  5'- --cAGC-GAGCGAgAACGCCGugCGCg -3'
miRNA:   3'- gccUUGaCUCGUUgUUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 142126 0.72 0.928614
Target:  5'- uGGAGCUGgaGGCgGACGACGCgGAaaaCGCc -3'
miRNA:   3'- gCCUUGAC--UCG-UUGUUGCGgUUg--GCG- -5'
13965 5' -51.8 NC_003521.1 + 17036 0.72 0.928614
Target:  5'- aGGAGCgacgacaacgGcAGCAccaGCAGCGCCGacgauACCGCu -3'
miRNA:   3'- gCCUUGa---------C-UCGU---UGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56706 0.72 0.928614
Target:  5'- gCGGAugacGCUGGucGCGuCGACGUCgAGCCGCg -3'
miRNA:   3'- -GCCU----UGACU--CGUuGUUGCGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 154290 0.71 0.933714
Target:  5'- uGGAGCgGGGCGGCAcgGCGuCCGggGCCGa -3'
miRNA:   3'- gCCUUGaCUCGUUGU--UGC-GGU--UGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.