miRNA display CGI


Results 141 - 160 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 104691 0.71 0.933714
Target:  5'- gGGGGCcgUGGGCGGCGucgACGUgcccuCGACCGCg -3'
miRNA:   3'- gCCUUG--ACUCGUUGU---UGCG-----GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 85615 0.71 0.933714
Target:  5'- aGGGGgUGAGaga-GACGCCGGCCuGCg -3'
miRNA:   3'- gCCUUgACUCguugUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 154290 0.71 0.933714
Target:  5'- uGGAGCgGGGCGGCAcgGCGuCCGggGCCGa -3'
miRNA:   3'- gCCUUGaCUCGUUGU--UGC-GGU--UGGCg -5'
13965 5' -51.8 NC_003521.1 + 168609 0.71 0.933714
Target:  5'- uGGGcuGCUGGGCGu--GCGCCAuCUGCu -3'
miRNA:   3'- gCCU--UGACUCGUuguUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 232345 0.71 0.933714
Target:  5'- aGGAGCaGuAGCAGCAGuCGCgGcggcACCGCg -3'
miRNA:   3'- gCCUUGaC-UCGUUGUU-GCGgU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 58690 0.71 0.933714
Target:  5'- cCGGcAGCgcuGCGGCuuCGUCAACCGCc -3'
miRNA:   3'- -GCC-UUGacuCGUUGuuGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 186764 0.71 0.937624
Target:  5'- cCGGAACcccaucuGCGACGaCCAACCGCa -3'
miRNA:   3'- -GCCUUGacucgu-UGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 155426 0.71 0.938578
Target:  5'- aGGAGCUGuGCgAGCug-GCCGACcCGCu -3'
miRNA:   3'- gCCUUGACuCG-UUGuugCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 235029 0.71 0.938578
Target:  5'- gCGGccccGCaGGGCGugAucACGCCAGCCGUu -3'
miRNA:   3'- -GCCu---UGaCUCGUugU--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191416 0.71 0.938578
Target:  5'- aGGGGCcGGGCGagcGCGGCGCUGucGCCGUc -3'
miRNA:   3'- gCCUUGaCUCGU---UGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 116399 0.71 0.938578
Target:  5'- uGGAACguugguUGGGUAGCGGCGgCGAUgGCa -3'
miRNA:   3'- gCCUUG------ACUCGUUGUUGCgGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 168506 0.71 0.938578
Target:  5'- aCGGAGgCgGAGgaCGGCGACGCCAGCagGCu -3'
miRNA:   3'- -GCCUU-GaCUC--GUUGUUGCGGUUGg-CG- -5'
13965 5' -51.8 NC_003521.1 + 86207 0.71 0.938578
Target:  5'- uGGAgGCgaaGGGCGGCGgcACGCCGGCgGCc -3'
miRNA:   3'- gCCU-UGa--CUCGUUGU--UGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 204381 0.71 0.938578
Target:  5'- aGGAGC-GAGCGcaacucgucuccGCGGCccuCCGACCGCg -3'
miRNA:   3'- gCCUUGaCUCGU------------UGUUGc--GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 240738 0.71 0.938578
Target:  5'- gCGuGAGCUGccGGaGGCGGCGCCugcGACCGCu -3'
miRNA:   3'- -GC-CUUGAC--UCgUUGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 97039 0.71 0.938578
Target:  5'- cCGcuGCUGccGGCGGCGACGgCGACCGUu -3'
miRNA:   3'- -GCcuUGAC--UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224313 0.71 0.9423
Target:  5'- gGGuGACgaagagucccagGGGCGACGGCGCCcgccccGACCGCc -3'
miRNA:   3'- gCC-UUGa-----------CUCGUUGUUGCGG------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55355 0.71 0.942755
Target:  5'- gCGGAggugaucGCcGAGCGGguGCGCCGgagcgccuagggGCCGCg -3'
miRNA:   3'- -GCCU-------UGaCUCGUUguUGCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 35369 0.71 0.942755
Target:  5'- aGGAACgacGccgagucccccucGGCGAgGACGCgGGCCGCg -3'
miRNA:   3'- gCCUUGa--C-------------UCGUUgUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239181 0.71 0.943207
Target:  5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3'
miRNA:   3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.