miRNA display CGI


Results 161 - 180 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 140772 0.71 0.943207
Target:  5'- uCGaGAccccGCUGAGUGACGcggGCGCCuuccucAACCGCg -3'
miRNA:   3'- -GC-CU----UGACUCGUUGU---UGCGG------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100687 0.71 0.943207
Target:  5'- uGGugauGCUGAuGCGGaGGCGCC-GCCGCg -3'
miRNA:   3'- gCCu---UGACU-CGUUgUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 216263 0.71 0.943207
Target:  5'- aGGAggccGCcGAGUAGUAGCGCCAGCuCGUg -3'
miRNA:   3'- gCCU----UGaCUCGUUGUUGCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 239181 0.71 0.943207
Target:  5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3'
miRNA:   3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 6153 0.71 0.943207
Target:  5'- aGGAA--GAGCAGCAACcccuggcgggGCCAGgCGCa -3'
miRNA:   3'- gCCUUgaCUCGUUGUUG----------CGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 117577 0.71 0.947602
Target:  5'- cCGGcgucuACUGGGC-GCGGCGCUAcgaccaccuaccGCCGCc -3'
miRNA:   3'- -GCCu----UGACUCGuUGUUGCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 132621 0.71 0.947602
Target:  5'- aCGGcuuccaGACUcGGCGGCGGCGCCAcCgGCg -3'
miRNA:   3'- -GCC------UUGAcUCGUUGUUGCGGUuGgCG- -5'
13965 5' -51.8 NC_003521.1 + 163733 0.71 0.947602
Target:  5'- uCGGGA-UGAGCG---GCGCCGGCgGCa -3'
miRNA:   3'- -GCCUUgACUCGUuguUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 55448 0.71 0.951361
Target:  5'- uGGAuCUGGGCGGCG-CGCUGgaagaggcacugcGCCGCc -3'
miRNA:   3'- gCCUuGACUCGUUGUuGCGGU-------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43804 0.71 0.951361
Target:  5'- gGGGGCcgccaUGucGCAGCAGCcgggucagccgccGCCGGCCGCg -3'
miRNA:   3'- gCCUUG-----ACu-CGUUGUUG-------------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 239683 0.71 0.951767
Target:  5'- gCGGAcGCUgaccaaGAGCGACGACGUgAacgaacuggGCCGCg -3'
miRNA:   3'- -GCCU-UGA------CUCGUUGUUGCGgU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 103917 0.71 0.951767
Target:  5'- gGGAgagAUUGAGCAcguCGuUGUCGACCGCg -3'
miRNA:   3'- gCCU---UGACUCGUu--GUuGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75997 0.71 0.951767
Target:  5'- aGGAGCacgaaugcuguUGAGgAACAGCGgCGGCUGUg -3'
miRNA:   3'- gCCUUG-----------ACUCgUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 201632 0.71 0.951767
Target:  5'- gCGGAcGCUgaccaaGAGCGACGACGUgAacgaacuggGCCGCg -3'
miRNA:   3'- -GCCU-UGA------CUCGUUGUUGCGgU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 149304 0.71 0.951767
Target:  5'- uGGAGC---GCGACGACGC-GGCCGCc -3'
miRNA:   3'- gCCUUGacuCGUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 220932 0.71 0.951767
Target:  5'- aGGAACaGcAGCAGgauCAGCGCCGAC-GCg -3'
miRNA:   3'- gCCUUGaC-UCGUU---GUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 125521 0.71 0.951767
Target:  5'- uGGuGCUGAGgauCGGCAGCGCUucCUGCg -3'
miRNA:   3'- gCCuUGACUC---GUUGUUGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 119314 0.71 0.951767
Target:  5'- aGGAGCgcuccAGCAcccCGACGCCGcCCGCc -3'
miRNA:   3'- gCCUUGac---UCGUu--GUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 137574 0.71 0.951767
Target:  5'- uCGGGgucGCcGcGCAGCAgccGCGCCAcCCGCa -3'
miRNA:   3'- -GCCU---UGaCuCGUUGU---UGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 50558 0.71 0.951767
Target:  5'- aGGAGC-GAGguGCGGCGgCAGCaGCg -3'
miRNA:   3'- gCCUUGaCUCguUGUUGCgGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.