miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 63141 0.66 0.997242
Target:  5'- uGGAGC--AGCAGCuGCGCgGGCUGa -3'
miRNA:   3'- gCCUUGacUCGUUGuUGCGgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 192165 0.66 0.997242
Target:  5'- aGGu-CUGcGGUGuCAGCGCCggUCGCg -3'
miRNA:   3'- gCCuuGAC-UCGUuGUUGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 143914 0.66 0.997242
Target:  5'- aGGAGacGGGC-ACGGCGC--GCCGCa -3'
miRNA:   3'- gCCUUgaCUCGuUGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 99594 0.66 0.997242
Target:  5'- -aGAACUGcGGCGcguuggugaccuGCAGCGCCcGGCgGCg -3'
miRNA:   3'- gcCUUGAC-UCGU------------UGUUGCGG-UUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 122101 0.66 0.997242
Target:  5'- uGGucucguGCggcuGCAGCGGCGUCucGCCGCg -3'
miRNA:   3'- gCCu-----UGacu-CGUUGUUGCGGu-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218033 0.66 0.997242
Target:  5'- ----cUUGGGCGGCGGCGgCGuCCGCa -3'
miRNA:   3'- gccuuGACUCGUUGUUGCgGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 1476 0.66 0.997242
Target:  5'- aCGGAcuaUGGGgAACGcCGCUAcACCGCc -3'
miRNA:   3'- -GCCUug-ACUCgUUGUuGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 74053 0.66 0.997104
Target:  5'- uCGGucAGCUcGGGCAGCGgcguggcgcucaugACGCCGguGCCGg -3'
miRNA:   3'- -GCC--UUGA-CUCGUUGU--------------UGCGGU--UGGCg -5'
13965 5' -51.8 NC_003521.1 + 60114 0.66 0.996961
Target:  5'- cCGGGgcuggugacgcgacuGCUGAGCGaggaggugucgaGCAcgcaggccucGCGCCAacgccuggaGCCGCu -3'
miRNA:   3'- -GCCU---------------UGACUCGU------------UGU----------UGCGGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 151353 0.66 0.996761
Target:  5'- uGGGcACggGGGCggUGACGgCAGCCGg -3'
miRNA:   3'- gCCU-UGa-CUCGuuGUUGCgGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 153044 0.66 0.996761
Target:  5'- gCGGuGCgcaagGcGCAggagGCGACGCCGuuCCGCg -3'
miRNA:   3'- -GCCuUGa----CuCGU----UGUUGCGGUu-GGCG- -5'
13965 5' -51.8 NC_003521.1 + 30574 0.66 0.996761
Target:  5'- uCGGggUaGGGCAGgucCAAgUGCCGuCCGCg -3'
miRNA:   3'- -GCCuuGaCUCGUU---GUU-GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 25783 0.66 0.996761
Target:  5'- aGGGGCUccacgcGGCuGCAGCccaccaucagcuGCCAGCCGUa -3'
miRNA:   3'- gCCUUGAc-----UCGuUGUUG------------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63605 0.66 0.996761
Target:  5'- aGGAcccaGCUGucCGaccuGCAGCGCCGccuggagaaguACCGCa -3'
miRNA:   3'- gCCU----UGACucGU----UGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 78134 0.66 0.996761
Target:  5'- uGG---UGGGCGcguuaGCGGCGgCGGCCGCg -3'
miRNA:   3'- gCCuugACUCGU-----UGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 100867 0.66 0.996761
Target:  5'- cCGGGACUGcuccauGCuGCuGCGUCGACUGa -3'
miRNA:   3'- -GCCUUGACu-----CGuUGuUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 142464 0.66 0.996761
Target:  5'- aGGAggGCgaGAGCGGCGGCGgCGguaGCgGCg -3'
miRNA:   3'- gCCU--UGa-CUCGUUGUUGCgGU---UGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.