miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 167137 0.66 0.996761
Target:  5'- gCGGAcUUGAuguaCGACcuGCGCCcGCCGCg -3'
miRNA:   3'- -GCCUuGACUc---GUUGu-UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 233036 0.66 0.996761
Target:  5'- aGcuGCUGAG-GGCAGCGCaGACCGUa -3'
miRNA:   3'- gCcuUGACUCgUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 131389 0.66 0.996761
Target:  5'- gGGGucgcGCUGucccuucccGGCAGCcGCGCCGccccGCCGUn -3'
miRNA:   3'- gCCU----UGAC---------UCGUUGuUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 64511 0.66 0.996709
Target:  5'- aCGGAcGCcucaaggccauguUGcGCGACGACGCCGAcgcCCGUc -3'
miRNA:   3'- -GCCU-UG-------------ACuCGUUGUUGCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 56322 0.66 0.996709
Target:  5'- aCGGAGgccgugauCUgGGGCAACGcGCGCCuggacgcccugguGGCCGCc -3'
miRNA:   3'- -GCCUU--------GA-CUCGUUGU-UGCGG-------------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53649 0.66 0.99644
Target:  5'- aGGAGCUGcagaAGCuGguGCGCCGcgucagcgggacgguGCUGCa -3'
miRNA:   3'- gCCUUGAC----UCGuUguUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 88451 0.66 0.996211
Target:  5'- aGGAccacCUGAuGCucAGCGACGCCGucACCuGCg -3'
miRNA:   3'- gCCUu---GACU-CG--UUGUUGCGGU--UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 482 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 4941 0.66 0.996211
Target:  5'- gGGGACcGcGCGACGuCGCCGGCgGg -3'
miRNA:   3'- gCCUUGaCuCGUUGUuGCGGUUGgCg -5'
13965 5' -51.8 NC_003521.1 + 129689 0.66 0.996211
Target:  5'- aGGcGCUGcgcaucuacuacGGCGACGACcCCGAgCGCu -3'
miRNA:   3'- gCCuUGAC------------UCGUUGUUGcGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 115676 0.66 0.996211
Target:  5'- gCGGcGCUGAGUccggaGGCcgUGgCGGCCGCc -3'
miRNA:   3'- -GCCuUGACUCG-----UUGuuGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31956 0.66 0.996211
Target:  5'- aGGAACaG-GCAcAUggUGCCGuccaGCCGCa -3'
miRNA:   3'- gCCUUGaCuCGU-UGuuGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 153756 0.66 0.996211
Target:  5'- uGGAggcgcaGCUGcGCGGCAAgGgCAuCCGCg -3'
miRNA:   3'- gCCU------UGACuCGUUGUUgCgGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 192351 0.66 0.996211
Target:  5'- cCGGcgacGCUGcAGCAcaagcCGACGCCucacaAACCGCc -3'
miRNA:   3'- -GCCu---UGAC-UCGUu----GUUGCGG-----UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 203666 0.66 0.996211
Target:  5'- aCGGc-CUGGGaGGCGugGCCGggaccugaggcgACCGCg -3'
miRNA:   3'- -GCCuuGACUCgUUGUugCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 113889 0.66 0.996211
Target:  5'- aCGGGguugacgcgGCUGAGCuGCAugagcagaGCGCCGcccCCGUu -3'
miRNA:   3'- -GCCU---------UGACUCGuUGU--------UGCGGUu--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.