miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 127531 0.66 0.996211
Target:  5'- uGGAA--GAGCAuguGCGGCGgCAGCaCGCc -3'
miRNA:   3'- gCCUUgaCUCGU---UGUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 100133 0.66 0.996211
Target:  5'- uGGAGacgGuGGCcGCcauGCGCCAGCUGCu -3'
miRNA:   3'- gCCUUga-C-UCGuUGu--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 241031 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 70424 0.66 0.996211
Target:  5'- aGuGGACUcgugauaGGCAGCcGCGCUcGCCGCa -3'
miRNA:   3'- gC-CUUGAc------UCGUUGuUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 203666 0.66 0.996211
Target:  5'- aCGGc-CUGGGaGGCGugGCCGggaccugaggcgACCGCg -3'
miRNA:   3'- -GCCuuGACUCgUUGUugCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53881 0.66 0.996211
Target:  5'- gGGGACauucgucggcgGAGCAGCAGCcUCAGCCa- -3'
miRNA:   3'- gCCUUGa----------CUCGUUGUUGcGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 223120 0.66 0.996211
Target:  5'- aCGGccuGCUGuGguGCGAguacguguauCGCCAcCCGCa -3'
miRNA:   3'- -GCCu--UGACuCguUGUU----------GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4941 0.66 0.996211
Target:  5'- gGGGACcGcGCGACGuCGCCGGCgGg -3'
miRNA:   3'- gCCUUGaCuCGUUGUuGCGGUUGgCg -5'
13965 5' -51.8 NC_003521.1 + 237299 0.66 0.996153
Target:  5'- gCGGcACaGAGCAccGCGauccagcACGCUGAUCGCa -3'
miRNA:   3'- -GCCuUGaCUCGU--UGU-------UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 111836 0.66 0.996153
Target:  5'- uGGAGCgugGuGCccAGCAucgucuuuuuccaGCGCCAcGCCGCc -3'
miRNA:   3'- gCCUUGa--CuCG--UUGU-------------UGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70663 0.66 0.995847
Target:  5'- uGGuGCUGcAGCugcugcuggaaaaccGACGGCGUCugcGCCGCa -3'
miRNA:   3'- gCCuUGAC-UCG---------------UUGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100055 0.66 0.995588
Target:  5'- aGGAggGCUgGGGCGACAACuG-CAACCuGCu -3'
miRNA:   3'- gCCU--UGA-CUCGUUGUUG-CgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 198520 0.66 0.995588
Target:  5'- uGGGACggcuaucGCuGCGGCGUCAGCCaGCu -3'
miRNA:   3'- gCCUUGacu----CGuUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 26528 0.66 0.995588
Target:  5'- cCGGugcCUGGgguGCAGCAGCGCUggcguuccGugCGCg -3'
miRNA:   3'- -GCCuu-GACU---CGUUGUUGCGG--------UugGCG- -5'
13965 5' -51.8 NC_003521.1 + 114818 0.66 0.995588
Target:  5'- gCGGGAUcucGCAACcGCGCCAGCgGa -3'
miRNA:   3'- -GCCUUGacuCGUUGuUGCGGUUGgCg -5'
13965 5' -51.8 NC_003521.1 + 42489 0.66 0.995588
Target:  5'- -cGAGCUGAgguugugguGCGAUuGCGaCAGCCGCu -3'
miRNA:   3'- gcCUUGACU---------CGUUGuUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 19582 0.66 0.995588
Target:  5'- cCGGGAUauagUGAaccaaGCGAUGACGuucacccucCCAACCGCa -3'
miRNA:   3'- -GCCUUG----ACU-----CGUUGUUGC---------GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 33886 0.66 0.995588
Target:  5'- aCGGccuguuGCUGGGCGACAGCaacuauuucgggGUgGugCGCg -3'
miRNA:   3'- -GCCu-----UGACUCGUUGUUG------------CGgUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 196694 0.66 0.995588
Target:  5'- cCGGccGACccGGGCGACAGCGaCUGucuguGCCGCu -3'
miRNA:   3'- -GCC--UUGa-CUCGUUGUUGC-GGU-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.