miRNA display CGI


Results 141 - 160 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 114818 0.66 0.995588
Target:  5'- gCGGGAUcucGCAACcGCGCCAGCgGa -3'
miRNA:   3'- -GCCUUGacuCGUUGuUGCGGUUGgCg -5'
13965 5' -51.8 NC_003521.1 + 37106 0.66 0.995588
Target:  5'- aGGuGCUcuacccGGCAcaGCAGCGCCGGCCcGUg -3'
miRNA:   3'- gCCuUGAc-----UCGU--UGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 129514 0.66 0.995588
Target:  5'- aGGGAg-GAGCucgAGCGCCGACCa- -3'
miRNA:   3'- gCCUUgaCUCGuugUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 163092 0.66 0.995588
Target:  5'- cCGGcccgucCUcGGGCGcCAGCGCCAcgaccACCGCc -3'
miRNA:   3'- -GCCuu----GA-CUCGUuGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60647 0.66 0.995588
Target:  5'- cCGcGAcCUGAGCAucaaguggggcACGAUGCUcuucgugcugcGGCCGCg -3'
miRNA:   3'- -GC-CUuGACUCGU-----------UGUUGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 151257 0.66 0.995588
Target:  5'- uGGGAC--GGCGACGACGagGAgCGCg -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCggUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 25541 0.66 0.995588
Target:  5'- aGGGA--GAGCGACGgcggACGCUguugugcaggcGGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGU----UGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 198520 0.66 0.995588
Target:  5'- uGGGACggcuaucGCuGCGGCGUCAGCCaGCu -3'
miRNA:   3'- gCCUUGacu----CGuUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 19582 0.66 0.995588
Target:  5'- cCGGGAUauagUGAaccaaGCGAUGACGuucacccucCCAACCGCa -3'
miRNA:   3'- -GCCUUG----ACU-----CGUUGUUGC---------GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 42489 0.66 0.995588
Target:  5'- -cGAGCUGAgguugugguGCGAUuGCGaCAGCCGCu -3'
miRNA:   3'- gcCUUGACU---------CGUUGuUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 64059 0.66 0.995521
Target:  5'- uGGAugucgauGCUGAuCAGCAugccCGCCAGCUGg -3'
miRNA:   3'- gCCU-------UGACUcGUUGUu---GCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 184101 0.66 0.995521
Target:  5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3'
miRNA:   3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 99295 0.66 0.995386
Target:  5'- uCGGAccgGCccgGAGC--CGGCGCCAucgucuacaagacgACCGCg -3'
miRNA:   3'- -GCCU---UGa--CUCGuuGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59933 0.67 0.994884
Target:  5'- uGGcguCUGAGCuccucCAggcGCGCCAgcgucuGCCGCa -3'
miRNA:   3'- gCCuu-GACUCGuu---GU---UGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 133661 0.67 0.994884
Target:  5'- uGaGAGCcGAcGCGAaAGCGCgGACCGCc -3'
miRNA:   3'- gC-CUUGaCU-CGUUgUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 120936 0.67 0.994884
Target:  5'- uGGGACgc--CGACGAUGUCuACCGCa -3'
miRNA:   3'- gCCUUGacucGUUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 212234 0.67 0.994884
Target:  5'- uGGcGgUGcGCAGCAGCccGCCGuCCGCg -3'
miRNA:   3'- gCCuUgACuCGUUGUUG--CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195879 0.67 0.994884
Target:  5'- uCGGGACUGccCAucccCAGCGUCAGCCu- -3'
miRNA:   3'- -GCCUUGACucGUu---GUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 208263 0.67 0.994884
Target:  5'- gGGAagACUcgcaAGCuGACGugGCUAACCGUg -3'
miRNA:   3'- gCCU--UGAc---UCG-UUGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 133000 0.67 0.994884
Target:  5'- cCGGggUUGGGacgggGACAGcCGCCAcCgGCa -3'
miRNA:   3'- -GCCuuGACUCg----UUGUU-GCGGUuGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.