miRNA display CGI


Results 61 - 80 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 37042 0.66 0.996761
Target:  5'- uGGAuacGgUGuGCGugGACGCCGaaaACCGg -3'
miRNA:   3'- gCCU---UgACuCGUugUUGCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 37106 0.66 0.995588
Target:  5'- aGGuGCUcuacccGGCAcaGCAGCGCCGGCCcGUg -3'
miRNA:   3'- gCCuUGAc-----UCGU--UGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 37212 0.81 0.512356
Target:  5'- cCGGGACUGuucuucAGCGGCGACGCgcuCAACUGCa -3'
miRNA:   3'- -GCCUUGAC------UCGUUGUUGCG---GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 39135 0.69 0.972118
Target:  5'- uGaGGCUGGGCAGCAuUGCCA-CCGg -3'
miRNA:   3'- gCcUUGACUCGUUGUuGCGGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 39409 0.69 0.971841
Target:  5'- uGGAGCcGAGUuugGGCGCCGagaaaauGCCGCu -3'
miRNA:   3'- gCCUUGaCUCGuugUUGCGGU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 40197 0.67 0.994419
Target:  5'- uGGAGCUGcuGGCGgaggACAuccacaucuacaucgACGCCuucCCGCa -3'
miRNA:   3'- gCCUUGAC--UCGU----UGU---------------UGCGGuu-GGCG- -5'
13965 5' -51.8 NC_003521.1 + 40468 0.72 0.905848
Target:  5'- gCGGAACgGAuagauguguccGCGGC-GCGCCAcggcGCCGCa -3'
miRNA:   3'- -GCCUUGaCU-----------CGUUGuUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 40769 0.66 0.997663
Target:  5'- uGGAGgaGuucgagauGCGcuGCGGCGCCGuggcgcGCCGCg -3'
miRNA:   3'- gCCUUgaCu-------CGU--UGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 41381 0.66 0.995588
Target:  5'- uGGAcagcaACUGGGUGAcCAGCaCC-ACCGCg -3'
miRNA:   3'- gCCU-----UGACUCGUU-GUUGcGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 42305 0.68 0.989879
Target:  5'- gGcGAGgUGGGUAGCAGCugcgugguGCCGGCgGCg -3'
miRNA:   3'- gC-CUUgACUCGUUGUUG--------CGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 42489 0.66 0.995588
Target:  5'- -cGAGCUGAgguugugguGCGAUuGCGaCAGCCGCu -3'
miRNA:   3'- gcCUUGACU---------CGUUGuUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 42930 0.66 0.997663
Target:  5'- aGGuGAC-GAGCAACAucCGCU-GCCGCc -3'
miRNA:   3'- gCC-UUGaCUCGUUGUu-GCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43136 0.68 0.985231
Target:  5'- uCGGcGCUGGGCGuggagguGCAcgcgcuggugGCGCUgcuGCCGCa -3'
miRNA:   3'- -GCCuUGACUCGU-------UGU----------UGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43432 0.7 0.955703
Target:  5'- uGGcGCUcgugcGGCAGCAGCGCCAccAgCGCg -3'
miRNA:   3'- gCCuUGAc----UCGUUGUUGCGGU--UgGCG- -5'
13965 5' -51.8 NC_003521.1 + 43484 0.68 0.988094
Target:  5'- gCGGccguGCUGGccGCGGCGgccaacauccgucaGCGCCuGCCGCc -3'
miRNA:   3'- -GCCu---UGACU--CGUUGU--------------UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43779 0.69 0.974785
Target:  5'- gGGAGaggGGGCGGCAgGCGCUgacggauguuGGCCGCc -3'
miRNA:   3'- gCCUUga-CUCGUUGU-UGCGG----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43804 0.71 0.951361
Target:  5'- gGGGGCcgccaUGucGCAGCAGCcgggucagccgccGCCGGCCGCg -3'
miRNA:   3'- gCCUUG-----ACu-CGUUGUUG-------------CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43832 0.75 0.816349
Target:  5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 44141 0.73 0.864812
Target:  5'- cCGGuAGCgUGGGCGACGGCccgggaGCCGGCCGg -3'
miRNA:   3'- -GCC-UUG-ACUCGUUGUUG------CGGUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.