miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 44330 0.69 0.974785
Target:  5'- aGGuGCUGGGCAagcuGCAcCGCau-CCGCg -3'
miRNA:   3'- gCCuUGACUCGU----UGUuGCGguuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 44956 0.66 0.997815
Target:  5'- aGGAA--GGGCGGCGACaCCGcgauccccgaacccuGCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGcGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 45095 0.66 0.998029
Target:  5'- ----cCUGGGCAGagguaGACGCCGGCCu- -3'
miRNA:   3'- gccuuGACUCGUUg----UUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 45307 0.66 0.997242
Target:  5'- aGGAGCcgGAGCccgAGCug-GCCGACgGCu -3'
miRNA:   3'- gCCUUGa-CUCG---UUGuugCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 45897 0.67 0.992208
Target:  5'- gCGGAGCcG-GCGGCgGugGCCGuCUGCg -3'
miRNA:   3'- -GCCUUGaCuCGUUG-UugCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 46791 0.67 0.994884
Target:  5'- uGGAucaUGAGUuccauggucugGAUGACGCC-GCCGCc -3'
miRNA:   3'- gCCUug-ACUCG-----------UUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 47251 0.68 0.987037
Target:  5'- uGGAacuccaucauGCUGuaccGCAGCGACGUCGAgaGCa -3'
miRNA:   3'- gCCU----------UGACu---CGUUGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 47410 0.68 0.989879
Target:  5'- gCGGAGCUGGauGUAGCAuCGCUcgGGCCa- -3'
miRNA:   3'- -GCCUUGACU--CGUUGUuGCGG--UUGGcg -5'
13965 5' -51.8 NC_003521.1 + 47874 0.66 0.997242
Target:  5'- aGGGGCaguagcagcaaGAGCAGCAggaggaggACuCCGACCGCc -3'
miRNA:   3'- gCCUUGa----------CUCGUUGU--------UGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 50558 0.71 0.951767
Target:  5'- aGGAGC-GAGguGCGGCGgCAGCaGCg -3'
miRNA:   3'- gCCUUGaCUCguUGUUGCgGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 51054 0.7 0.969254
Target:  5'- gGGAAcCUGGGUAGgAACGCUAAaugaCGUg -3'
miRNA:   3'- gCCUU-GACUCGUUgUUGCGGUUg---GCG- -5'
13965 5' -51.8 NC_003521.1 + 51926 0.66 0.997663
Target:  5'- aCGGAuuuCUGAcGCAGCAACcCCcaccCCGUc -3'
miRNA:   3'- -GCCUu--GACU-CGUUGUUGcGGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 53308 0.73 0.895694
Target:  5'- aGGAGCUGGGCuggacccacuucgacAGCGGCGgCGACCu- -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCgGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 53649 0.66 0.99644
Target:  5'- aGGAGCUGcagaAGCuGguGCGCCGcgucagcgggacgguGCUGCa -3'
miRNA:   3'- gCCUUGAC----UCGuUguUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53730 0.66 0.997663
Target:  5'- aGGAGCgcucGCugGAgGACGCCcuGGCCGCc -3'
miRNA:   3'- gCCUUGacu-CG--UUgUUGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53881 0.66 0.996211
Target:  5'- gGGGACauucgucggcgGAGCAGCAGCcUCAGCCa- -3'
miRNA:   3'- gCCUUGa----------CUCGUUGUUGcGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 54578 0.78 0.629542
Target:  5'- uGGuGACgGAGCAcgacgcgcugcucuACGugGCCAGCCGCa -3'
miRNA:   3'- gCC-UUGaCUCGU--------------UGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55181 0.66 0.997663
Target:  5'- gCGGAcGCUGAaacacgaccgGCGAUGGCaGUCcGCCGCg -3'
miRNA:   3'- -GCCU-UGACU----------CGUUGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55355 0.71 0.942755
Target:  5'- gCGGAggugaucGCcGAGCGGguGCGCCGgagcgccuagggGCCGCg -3'
miRNA:   3'- -GCCU-------UGaCUCGUUguUGCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55448 0.71 0.951361
Target:  5'- uGGAuCUGGGCGGCG-CGCUGgaagaggcacugcGCCGCc -3'
miRNA:   3'- gCCUuGACUCGUUGUuGCGGU-------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.