miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 55559 0.66 0.997623
Target:  5'- gGGAAguagcacucgcggUUGAGCGgacACAGCGaCCAcACCGUc -3'
miRNA:   3'- gCCUU-------------GACUCGU---UGUUGC-GGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 55691 0.67 0.994884
Target:  5'- aGGAACUG-GCAGuuGCGCaucCCGUg -3'
miRNA:   3'- gCCUUGACuCGUUguUGCGguuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56105 0.66 0.997242
Target:  5'- uGGAcCUGuGCAAgGcCgGCCuGCCGCg -3'
miRNA:   3'- gCCUuGACuCGUUgUuG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56251 0.67 0.992208
Target:  5'- uCGGGGCUGAG--GCAG-GCCGGCagGCa -3'
miRNA:   3'- -GCCUUGACUCguUGUUgCGGUUGg-CG- -5'
13965 5' -51.8 NC_003521.1 + 56322 0.66 0.996709
Target:  5'- aCGGAGgccgugauCUgGGGCAACGcGCGCCuggacgcccugguGGCCGCc -3'
miRNA:   3'- -GCCUU--------GA-CUCGUUGU-UGCGG-------------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56378 0.73 0.875095
Target:  5'- uGGuGCUGGGCAauacGCGACGCUAcuucgaucugcgcguGCUGCg -3'
miRNA:   3'- gCCuUGACUCGU----UGUUGCGGU---------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56705 0.72 0.899571
Target:  5'- uCGGAcCUGGGCcACGAgGCggccuuCGACCGCg -3'
miRNA:   3'- -GCCUuGACUCGuUGUUgCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56706 0.72 0.928614
Target:  5'- gCGGAugacGCUGGucGCGuCGACGUCgAGCCGCg -3'
miRNA:   3'- -GCCU----UGACU--CGUuGUUGCGG-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56896 0.8 0.5319
Target:  5'- gCGaGAGCUGGccgucGCGACAGCGCCGcagcACCGCc -3'
miRNA:   3'- -GC-CUUGACU-----CGUUGUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 57612 0.67 0.992619
Target:  5'- gCGGu-CUGGGCAGCuucaggcucuuucagAugGUCAugCGCc -3'
miRNA:   3'- -GCCuuGACUCGUUG---------------UugCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 57798 0.66 0.997815
Target:  5'- uCGGGGCcucgcucuGCAAaaucucgcccgugauCAGCGCCGugCGCg -3'
miRNA:   3'- -GCCUUGacu-----CGUU---------------GUUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 58011 0.68 0.987037
Target:  5'- uCGGuccuguACUGGGCGACGGCGaUCucuuCUGCg -3'
miRNA:   3'- -GCCu-----UGACUCGUUGUUGC-GGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 58690 0.71 0.933714
Target:  5'- cCGGcAGCgcuGCGGCuuCGUCAACCGCc -3'
miRNA:   3'- -GCC-UUGacuCGUUGuuGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 58811 0.68 0.988526
Target:  5'- aCGGu-CUcGAGCAgGCAGCGCguggCGGCCGUg -3'
miRNA:   3'- -GCCuuGA-CUCGU-UGUUGCG----GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59120 0.7 0.966186
Target:  5'- uGGGccuuuaccuGCUGGGCAuCcGCGCCAguaacgucacgGCCGCc -3'
miRNA:   3'- gCCU---------UGACUCGUuGuUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59357 0.75 0.816349
Target:  5'- ---cGCUGcaGGCGGC-GCGCCAGCCGCu -3'
miRNA:   3'- gccuUGAC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59606 0.66 0.997242
Target:  5'- aCGGuAgUGgcGGCGGCcccGGCGgCGACCGCg -3'
miRNA:   3'- -GCCuUgAC--UCGUUG---UUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 59695 0.66 0.997242
Target:  5'- ---cGCUGccGGCGGCGGCGCCGcugUCGCg -3'
miRNA:   3'- gccuUGAC--UCGUUGUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 59933 0.67 0.994884
Target:  5'- uGGcguCUGAGCuccucCAggcGCGCCAgcgucuGCCGCa -3'
miRNA:   3'- gCCuu-GACUCGuu---GU---UGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60114 0.66 0.996961
Target:  5'- cCGGGgcuggugacgcgacuGCUGAGCGaggaggugucgaGCAcgcaggccucGCGCCAacgccuggaGCCGCu -3'
miRNA:   3'- -GCCU---------------UGACUCGU------------UGU----------UGCGGU---------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.