miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 60134 0.67 0.992208
Target:  5'- uGGAACUcGGCGGCcacauCGCCGuugACCGg -3'
miRNA:   3'- gCCUUGAcUCGUUGuu---GCGGU---UGGCg -5'
13965 5' -51.8 NC_003521.1 + 60327 0.73 0.893063
Target:  5'- aCGGcGCUGAuGCAGCcg-GCCAACCuGCg -3'
miRNA:   3'- -GCCuUGACU-CGUUGuugCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 60647 0.66 0.995588
Target:  5'- cCGcGAcCUGAGCAucaaguggggcACGAUGCUcuucgugcugcGGCCGCg -3'
miRNA:   3'- -GC-CUuGACUCGU-----------UGUUGCGG-----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60700 0.68 0.989879
Target:  5'- gGGGACccggGGGCGGCGcgggucgcaccACGCC-GCUGCc -3'
miRNA:   3'- gCCUUGa---CUCGUUGU-----------UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 60985 0.67 0.993202
Target:  5'- aGGGA--GGGCAGCGGCGUggugCGACcCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGCG----GUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 61137 0.73 0.88633
Target:  5'- cCGaGAACUGcGGCAcCAGCaCCAGCUGCg -3'
miRNA:   3'- -GC-CUUGAC-UCGUuGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 61417 0.66 0.998029
Target:  5'- aGGGACUGcAGCAugAGCuGC--ACCaGCa -3'
miRNA:   3'- gCCUUGAC-UCGUugUUG-CGguUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 62312 0.69 0.977261
Target:  5'- cCGGA--UGGGCGACGAgGU--ACCGCg -3'
miRNA:   3'- -GCCUugACUCGUUGUUgCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 62565 0.69 0.972118
Target:  5'- aCGucGCaauGCAGCAACGCC-GCCGCc -3'
miRNA:   3'- -GCcuUGacuCGUUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63141 0.66 0.997242
Target:  5'- uGGAGC--AGCAGCuGCGCgGGCUGa -3'
miRNA:   3'- gCCUUGacUCGUUGuUGCGgUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 63355 0.67 0.991104
Target:  5'- uGGAggGC-GGGCAGC-GCGCCGG-CGCa -3'
miRNA:   3'- gCCU--UGaCUCGUUGuUGCGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 63605 0.66 0.996761
Target:  5'- aGGAcccaGCUGucCGaccuGCAGCGCCGccuggagaaguACCGCa -3'
miRNA:   3'- gCCU----UGACucGU----UGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63926 0.78 0.663127
Target:  5'- uGGAGCUGcAGCAG-GACGUCAACCGg -3'
miRNA:   3'- gCCUUGAC-UCGUUgUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 63959 0.72 0.899571
Target:  5'- uGGAGCUGcuGGC-GCGGCGCCAuaACCa- -3'
miRNA:   3'- gCCUUGAC--UCGuUGUUGCGGU--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 64059 0.66 0.995521
Target:  5'- uGGAugucgauGCUGAuCAGCAugccCGCCAGCUGg -3'
miRNA:   3'- gCCU-------UGACUcGUUGUu---GCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 64328 0.66 0.997242
Target:  5'- uGGuACacGAGCAGaugaGCCAGCUGCa -3'
miRNA:   3'- gCCuUGa-CUCGUUguugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 64511 0.66 0.996709
Target:  5'- aCGGAcGCcucaaggccauguUGcGCGACGACGCCGAcgcCCGUc -3'
miRNA:   3'- -GCCU-UG-------------ACuCGUUGUUGCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 64723 0.68 0.985403
Target:  5'- uCGcAGCUGAGCAagaagauggacGCcguggccaaGACGCCGGCCGg -3'
miRNA:   3'- -GCcUUGACUCGU-----------UG---------UUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 64813 0.67 0.994091
Target:  5'- uGGugUUGAGCAGCAgcagacggGCGUCGGCgucguCGCg -3'
miRNA:   3'- gCCuuGACUCGUUGU--------UGCGGUUG-----GCG- -5'
13965 5' -51.8 NC_003521.1 + 65515 0.66 0.998029
Target:  5'- uCGaGcGCUGucAGCuggGCGACGCCGagACCGUg -3'
miRNA:   3'- -GC-CuUGAC--UCGu--UGUUGCGGU--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.