miRNA display CGI


Results 141 - 160 of 622 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 65561 0.73 0.88633
Target:  5'- uCGGAGCU--GCGACAGCGCCc-CCaGCa -3'
miRNA:   3'- -GCCUUGAcuCGUUGUUGCGGuuGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 65635 0.73 0.88905
Target:  5'- aGGAGCUGAcgcGCGccagccaggaccuggAgAACGCCAuCCGCg -3'
miRNA:   3'- gCCUUGACU---CGU---------------UgUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 65870 0.69 0.977022
Target:  5'- aCGGAACUGAugaaccagaagcuGCAGuCGAcCGUCAAacuCCGCg -3'
miRNA:   3'- -GCCUUGACU-------------CGUU-GUU-GCGGUU---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 66372 0.7 0.962908
Target:  5'- cCGGcGGC-GAGCAGCGACaCCAGCgCGUg -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUUGcGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 67123 0.66 0.997242
Target:  5'- --cAGCaGcAGCAACAGCaGCgGGCCGCa -3'
miRNA:   3'- gccUUGaC-UCGUUGUUG-CGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 67540 0.69 0.979553
Target:  5'- uGGGACUcgGAGau-CAuGCGCCAACUGUg -3'
miRNA:   3'- gCCUUGA--CUCguuGU-UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 67676 0.66 0.997663
Target:  5'- uGGAGCUGaAGCccAAguACGCCGAggucuacgccuCCGUc -3'
miRNA:   3'- gCCUUGAC-UCG--UUguUGCGGUU-----------GGCG- -5'
13965 5' -51.8 NC_003521.1 + 67718 0.68 0.990384
Target:  5'- aGGAGCUGgugcaagugcucuucAagaucuucucGCAACAGUGCCGGCUGCu -3'
miRNA:   3'- gCCUUGAC---------------U----------CGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 68537 0.66 0.996761
Target:  5'- cCGGAcgGC--GGCAGCGGcCGCCAACUaucaGCa -3'
miRNA:   3'- -GCCU--UGacUCGUUGUU-GCGGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 69484 0.73 0.864812
Target:  5'- gCGGAACccGAGCGGCGGCGggaguGCCGCc -3'
miRNA:   3'- -GCCUUGa-CUCGUUGUUGCggu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 69777 0.72 0.917703
Target:  5'- gCGGuGCUGGGCcuCAACGCgGcCUGCg -3'
miRNA:   3'- -GCCuUGACUCGuuGUUGCGgUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 69833 0.67 0.991104
Target:  5'- aGGcACcaGAGCGGCAggucgaugacGCGCCGaugaggccGCCGCg -3'
miRNA:   3'- gCCuUGa-CUCGUUGU----------UGCGGU--------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70127 0.66 0.997623
Target:  5'- uGGcGCUGcGCGgcggccucaucgGCAGCGUCAucgaccuGCCGCu -3'
miRNA:   3'- gCCuUGACuCGU------------UGUUGCGGU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70424 0.66 0.996211
Target:  5'- aGuGGACUcgugauaGGCAGCcGCGCUcGCCGCa -3'
miRNA:   3'- gC-CUUGAc------UCGUUGuUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70568 0.67 0.990749
Target:  5'- uCGcuGCUGGGCGaccuGCAccgcuuucucuucgGCGCCGACCuGCg -3'
miRNA:   3'- -GCcuUGACUCGU----UGU--------------UGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 70663 0.66 0.995847
Target:  5'- uGGuGCUGcAGCugcugcuggaaaaccGACGGCGUCugcGCCGCa -3'
miRNA:   3'- gCCuUGAC-UCG---------------UUGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 70867 0.74 0.84942
Target:  5'- aGGAGgaGAGCAACGACGaCAuAUCGCc -3'
miRNA:   3'- gCCUUgaCUCGUUGUUGCgGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 71235 0.68 0.987037
Target:  5'- gCGGcACUGA-CAGCAcagACGCCAcgaucCCGCc -3'
miRNA:   3'- -GCCuUGACUcGUUGU---UGCGGUu----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 71305 0.7 0.955703
Target:  5'- uGGGGCaccagcaccugGGGCGGCGGCGUccgauaCAGCCGCu -3'
miRNA:   3'- gCCUUGa----------CUCGUUGUUGCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 71459 0.7 0.966186
Target:  5'- gGGAagacaugcgcccGCUGAacagagaagcGCAACccgaaaccACGCCGGCCGCg -3'
miRNA:   3'- gCCU------------UGACU----------CGUUGu-------UGCGGUUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.