miRNA display CGI


Results 161 - 180 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 73040 0.68 0.985403
Target:  5'- uGGAGCUGuGC-----CGCCGACgGCg -3'
miRNA:   3'- gCCUUGACuCGuuguuGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 73125 0.72 0.917703
Target:  5'- aCGGAgguGCUGcacggcgggGGCAGCGGCGgCGgcGCCGCc -3'
miRNA:   3'- -GCCU---UGAC---------UCGUUGUUGCgGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73185 0.69 0.977261
Target:  5'- gCGGAGCUGgccGGCAuCGACGugaCCGACCccgaGCg -3'
miRNA:   3'- -GCCUUGAC---UCGUuGUUGC---GGUUGG----CG- -5'
13965 5' -51.8 NC_003521.1 + 73331 0.69 0.977261
Target:  5'- gCGGAGCUGAGggucacCGACAugGCgUggUCGUc -3'
miRNA:   3'- -GCCUUGACUC------GUUGUugCG-GuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73711 0.67 0.991104
Target:  5'- uGGAGC---GCAGCGACcCgGGCCGCg -3'
miRNA:   3'- gCCUUGacuCGUUGUUGcGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73768 0.66 0.997663
Target:  5'- cCGGcACcGGcGuCAugAGCGCCAcGCCGCu -3'
miRNA:   3'- -GCCuUGaCU-C-GUugUUGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 73831 0.66 0.996761
Target:  5'- uGGAcgcGCUGAcggccgagGgAACGACGUCAACCa- -3'
miRNA:   3'- gCCU---UGACU--------CgUUGUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 74053 0.66 0.997104
Target:  5'- uCGGucAGCUcGGGCAGCGgcguggcgcucaugACGCCGguGCCGg -3'
miRNA:   3'- -GCC--UUGA-CUCGUUGU--------------UGCGGU--UGGCg -5'
13965 5' -51.8 NC_003521.1 + 74175 0.68 0.988526
Target:  5'- uGGccGACUGcGCcGCGGCGCCcGGCgCGCg -3'
miRNA:   3'- gCC--UUGACuCGuUGUUGCGG-UUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 74575 0.73 0.879374
Target:  5'- gCGGcGACgGAGCGGCGGCGCgGcgucCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUUGCGgUu---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 74794 0.67 0.992619
Target:  5'- gCGGcAGCgGuAGCGGCGagacgcggacggacgGCGCCGAgCGCg -3'
miRNA:   3'- -GCC-UUGaC-UCGUUGU---------------UGCGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 74871 0.73 0.879374
Target:  5'- uGGcGC--GGCGGCGaggcGCGCCGGCCGCg -3'
miRNA:   3'- gCCuUGacUCGUUGU----UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 74967 0.68 0.988526
Target:  5'- gGGAGCcgcuGCcGCGGCGCC-GCCGUc -3'
miRNA:   3'- gCCUUGacu-CGuUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75090 0.66 0.998029
Target:  5'- gCGGGACgccgucGCGcuCGGCGCCGuccguCCGCg -3'
miRNA:   3'- -GCCUUGacu---CGUu-GUUGCGGUu----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 75421 0.68 0.985403
Target:  5'- gGGAGCuUGAGCAGCucggUGCUuuugcagaAACCGUa -3'
miRNA:   3'- gCCUUG-ACUCGUUGuu--GCGG--------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75531 0.8 0.561693
Target:  5'- aGGAGCUGuGUcaguucAGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGACuCG------UUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 75822 0.68 0.987037
Target:  5'- aGGAgggcGCUGGcGUAGCcgcCGCCGgcGCCGCu -3'
miRNA:   3'- gCCU----UGACU-CGUUGuu-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75878 0.73 0.893063
Target:  5'- uCGGcGACUGAGCcgUGGCGCCGcCCGa -3'
miRNA:   3'- -GCC-UUGACUCGuuGUUGCGGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 75997 0.71 0.951767
Target:  5'- aGGAGCacgaaugcuguUGAGgAACAGCGgCGGCUGUg -3'
miRNA:   3'- gCCUUG-----------ACUCgUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 76515 0.7 0.966186
Target:  5'- gCGGGACcGcGCGACAccagggccuGCGCCGucagcCCGCg -3'
miRNA:   3'- -GCCUUGaCuCGUUGU---------UGCGGUu----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.