miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 226356 0.66 0.997242
Target:  5'- uGGuaucugUUGGGCGugAcGgGCCGGCCGCg -3'
miRNA:   3'- gCCuu----GACUCGUugU-UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226156 0.79 0.568714
Target:  5'- -cGAGCgcGAGCGGCAGCGCCAgacgcgcauggagcACCGCa -3'
miRNA:   3'- gcCUUGa-CUCGUUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226034 0.7 0.966186
Target:  5'- gCGGcGC-GAGCGcgaGCGGCGCguGCUGCa -3'
miRNA:   3'- -GCCuUGaCUCGU---UGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225867 0.73 0.872199
Target:  5'- uGGGGCUGcaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- gCCUUGAC--UCGUUG--UUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225587 0.69 0.981669
Target:  5'- uGGcGCUcGGCGGCcucGCGCuCGGCCGCc -3'
miRNA:   3'- gCCuUGAcUCGUUGu--UGCG-GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225269 0.68 0.983616
Target:  5'- gCGGcucaucguGCUGGGCAAguGCGUggugcuggugggCGACCGCu -3'
miRNA:   3'- -GCCu-------UGACUCGUUguUGCG------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 225214 0.73 0.893063
Target:  5'- aCGGAGCUGGugcucuGUAugGGCGgCAGCaCGCg -3'
miRNA:   3'- -GCCUUGACU------CGUugUUGCgGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 225012 0.66 0.997242
Target:  5'- cCGGAGCcc--CGAC-GCGCUGGCCGCc -3'
miRNA:   3'- -GCCUUGacucGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224760 0.68 0.983616
Target:  5'- uCGGGGCuccggcaguUGuGCAGCAGCGCCcgcACCa- -3'
miRNA:   3'- -GCCUUG---------ACuCGUUGUUGCGGu--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 224562 0.78 0.632599
Target:  5'- aGGAACc-AGCGGCAGCGC-AGCCGCa -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224313 0.71 0.9423
Target:  5'- gGGuGACgaagagucccagGGGCGACGGCGCCcgccccGACCGCc -3'
miRNA:   3'- gCC-UUGa-----------CUCGUUGUUGCGG------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224152 0.66 0.997242
Target:  5'- aGGAagaGCcuaugGAGCccGACAACGUggucccgagggaCAGCCGCa -3'
miRNA:   3'- gCCU---UGa----CUCG--UUGUUGCG------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 224046 0.67 0.991104
Target:  5'- gCGGcccACggcGGUAACGGCGCCGACaGCg -3'
miRNA:   3'- -GCCu--UGac-UCGUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 223905 0.66 0.995588
Target:  5'- uGGcAGCUGGGCAggcGCAucguggACGCCuACCa- -3'
miRNA:   3'- gCC-UUGACUCGU---UGU------UGCGGuUGGcg -5'
13965 5' -51.8 NC_003521.1 + 223568 0.71 0.951767
Target:  5'- -cGAGCgcuGCGAgGACGCCAuCCGCu -3'
miRNA:   3'- gcCUUGacuCGUUgUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 223380 0.67 0.994091
Target:  5'- uGGuGCUGcGCGagACGGcCGCCAucCCGCa -3'
miRNA:   3'- gCCuUGACuCGU--UGUU-GCGGUu-GGCG- -5'
13965 5' -51.8 NC_003521.1 + 223120 0.66 0.996211
Target:  5'- aCGGccuGCUGuGguGCGAguacguguauCGCCAcCCGCa -3'
miRNA:   3'- -GCCu--UGACuCguUGUU----------GCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222922 0.68 0.983616
Target:  5'- ---uGCUGGGCAGCGuggaggcgcugcGCGCCuGCCGg -3'
miRNA:   3'- gccuUGACUCGUUGU------------UGCGGuUGGCg -5'
13965 5' -51.8 NC_003521.1 + 222858 0.66 0.997242
Target:  5'- cCGcGAGCUGcGCGuuuucauccgcCAGCGCCucuGCUGCg -3'
miRNA:   3'- -GC-CUUGACuCGUu----------GUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222494 0.66 0.997663
Target:  5'- -cGAACUGGucCAACAGCaCCAcGCCGCu -3'
miRNA:   3'- gcCUUGACUc-GUUGUUGcGGU-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.