miRNA display CGI


Results 61 - 80 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 222223 0.77 0.713395
Target:  5'- uGGAgcugucgugucaGCUGAGCAGCGACGaggaCGaggcGCCGCg -3'
miRNA:   3'- gCCU------------UGACUCGUUGUUGCg---GU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 222131 0.67 0.992313
Target:  5'- cCGGGAagaaUGAGCucugaugaugguccuGCAGCGCCc-CCGUg -3'
miRNA:   3'- -GCCUUg---ACUCGu--------------UGUUGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 221988 0.68 0.98688
Target:  5'- gGGGACgggGAGggaGACGACGCgGguggcggGCCGCc -3'
miRNA:   3'- gCCUUGa--CUCg--UUGUUGCGgU-------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 221900 0.68 0.983616
Target:  5'- gCGG-AUUGccGGCGcGCGGCGCCAcccuucggggcuGCCGCg -3'
miRNA:   3'- -GCCuUGAC--UCGU-UGUUGCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 221237 0.7 0.969254
Target:  5'- cCGcGACgugGAGCuGCAGCGCUcccugcugacGGCCGCg -3'
miRNA:   3'- -GCcUUGa--CUCGuUGUUGCGG----------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 221069 0.67 0.994091
Target:  5'- gCGGuGGCUGaAGUGGaagccCGACGCCGucACCGCc -3'
miRNA:   3'- -GCC-UUGAC-UCGUU-----GUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 220932 0.71 0.951767
Target:  5'- aGGAACaGcAGCAGgauCAGCGCCGAC-GCg -3'
miRNA:   3'- gCCUUGaC-UCGUU---GUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 220500 0.68 0.985403
Target:  5'- cCGGGA--GAGCAGCAGCGUgGuggccuccugguGCUGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGUUGCGgU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218920 0.7 0.969254
Target:  5'- aCGGuGgaGAGgGACGAggcgcCGCCGGCCGUg -3'
miRNA:   3'- -GCCuUgaCUCgUUGUU-----GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218673 0.73 0.864812
Target:  5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3'
miRNA:   3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218033 0.66 0.997242
Target:  5'- ----cUUGGGCGGCGGCGgCGuCCGCa -3'
miRNA:   3'- gccuuGACUCGUUGUUGCgGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 217314 0.66 0.997242
Target:  5'- aCGGcGCUGGGCuuu-AUGUUGGCCGUg -3'
miRNA:   3'- -GCCuUGACUCGuuguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 216833 0.73 0.864812
Target:  5'- aGGAACagGAGCGAUAugaaGCGUCccuGGCCGCu -3'
miRNA:   3'- gCCUUGa-CUCGUUGU----UGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 216263 0.71 0.943207
Target:  5'- aGGAggccGCcGAGUAGUAGCGCCAGCuCGUg -3'
miRNA:   3'- gCCU----UGaCUCGUUGUUGCGGUUG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 216195 0.67 0.993202
Target:  5'- aGGcGCUGAGCAcCGGCGCgGgguccuccuggcACaCGCa -3'
miRNA:   3'- gCCuUGACUCGUuGUUGCGgU------------UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 216095 0.68 0.988094
Target:  5'- aCGGuguugaUGAGCAugaacugguugagcGCGGCGCggaGGCCGCg -3'
miRNA:   3'- -GCCuug---ACUCGU--------------UGUUGCGg--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215739 0.7 0.966186
Target:  5'- gCGGcAGCaagGAGCccGACGACGCguuGCCGCu -3'
miRNA:   3'- -GCC-UUGa--CUCG--UUGUUGCGgu-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215659 0.69 0.976537
Target:  5'- gCGGcgg-GAGCAGCGaaagcgcgaccagaACGCCGuACCGCc -3'
miRNA:   3'- -GCCuugaCUCGUUGU--------------UGCGGU-UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215116 0.71 0.951767
Target:  5'- gCGGAuaggcucucGCcGGGCAGCAAacagcauggaacCGCCGucGCCGCg -3'
miRNA:   3'- -GCCU---------UGaCUCGUUGUU------------GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215012 0.72 0.899571
Target:  5'- aGGAAgagGAGaCGGCGGCGCUGACCGa -3'
miRNA:   3'- gCCUUga-CUC-GUUGUUGCGGUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.