miRNA display CGI


Results 81 - 100 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 214143 0.66 0.998029
Target:  5'- uGGAGuaGAGCAGCAGgGa--GCCGCg -3'
miRNA:   3'- gCCUUgaCUCGUUGUUgCgguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 213720 0.66 0.997242
Target:  5'- gGGGAUgcccAGCcaGACGGCGCCGcagaagGCCGUg -3'
miRNA:   3'- gCCUUGac--UCG--UUGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 213545 0.7 0.959055
Target:  5'- uCGGAGCaccagguguagaUGAGCGugcgaccgacaGCAGCGCCAcguagcaGCCGg -3'
miRNA:   3'- -GCCUUG------------ACUCGU-----------UGUUGCGGU-------UGGCg -5'
13965 5' -51.8 NC_003521.1 + 213102 0.68 0.986074
Target:  5'- aGGAgacgcggcucgacgcGCUGGGUguGGCGugGUgCGGCCGCa -3'
miRNA:   3'- gCCU---------------UGACUCG--UUGUugCG-GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 212234 0.67 0.994884
Target:  5'- uGGcGgUGcGCAGCAGCccGCCGuCCGCg -3'
miRNA:   3'- gCCuUgACuCGUUGUUG--CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 211192 0.67 0.991104
Target:  5'- ----cCUGGGCGACGACGaCCGAcgacCCGUg -3'
miRNA:   3'- gccuuGACUCGUUGUUGC-GGUU----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 211099 0.66 0.995588
Target:  5'- aCGGAGg-GAgGgGACgAGCGCCAcggACCGCu -3'
miRNA:   3'- -GCCUUgaCU-CgUUG-UUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 210124 0.66 0.997663
Target:  5'- aCGGGACUcGGCGcuACGAgGUagagcuGCCGCa -3'
miRNA:   3'- -GCCUUGAcUCGU--UGUUgCGgu----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 210033 0.66 0.997242
Target:  5'- cCGGAGCUc-GCucCAcUGCCAGCCGg -3'
miRNA:   3'- -GCCUUGAcuCGuuGUuGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 208597 0.74 0.857217
Target:  5'- aCGGcGACUGAGUuuGCGGCGgCCAuagccagucACCGCg -3'
miRNA:   3'- -GCC-UUGACUCGu-UGUUGC-GGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 208263 0.67 0.994884
Target:  5'- gGGAagACUcgcaAGCuGACGugGCUAACCGUg -3'
miRNA:   3'- gCCU--UGAc---UCG-UUGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 208068 0.66 0.997242
Target:  5'- ------cGGGCGACGGCuUCGACCGCg -3'
miRNA:   3'- gccuugaCUCGUUGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 207470 0.67 0.992208
Target:  5'- aGGAACcgGAG-GACGAUGCC-GCCGa -3'
miRNA:   3'- gCCUUGa-CUCgUUGUUGCGGuUGGCg -5'
13965 5' -51.8 NC_003521.1 + 206865 0.67 0.994884
Target:  5'- gGGAACUccGCucCAGCuGCUcGCCGCg -3'
miRNA:   3'- gCCUUGAcuCGuuGUUG-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 206566 0.67 0.994091
Target:  5'- aGGAcgAUaGGGCGACGGgGCCGACagGCc -3'
miRNA:   3'- gCCU--UGaCUCGUUGUUgCGGUUGg-CG- -5'
13965 5' -51.8 NC_003521.1 + 204735 0.66 0.996211
Target:  5'- aGGGGCUcGGGCuGGCGugGCgCGGCuuCGCg -3'
miRNA:   3'- gCCUUGA-CUCG-UUGUugCG-GUUG--GCG- -5'
13965 5' -51.8 NC_003521.1 + 204503 0.66 0.997663
Target:  5'- gCGcGAACUGgccuGGCGGCggGugGCCGACgacuCGCa -3'
miRNA:   3'- -GC-CUUGAC----UCGUUG--UugCGGUUG----GCG- -5'
13965 5' -51.8 NC_003521.1 + 204451 0.68 0.985403
Target:  5'- aCGGAA---AGCAGC-ACGCgaAGCCGCg -3'
miRNA:   3'- -GCCUUgacUCGUUGuUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204381 0.71 0.938578
Target:  5'- aGGAGC-GAGCGcaacucgucuccGCGGCccuCCGACCGCg -3'
miRNA:   3'- gCCUUGaCUCGU------------UGUUGc--GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 204211 0.76 0.742804
Target:  5'- cCGGAuUUGAGCGAgGGCGUCAggcaGCCGUg -3'
miRNA:   3'- -GCCUuGACUCGUUgUUGCGGU----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.