miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 204117 0.66 0.998029
Target:  5'- gCGGAGC-GGGUgcucGGCGGCGaCAuCCGCg -3'
miRNA:   3'- -GCCUUGaCUCG----UUGUUGCgGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 203666 0.66 0.996211
Target:  5'- aCGGc-CUGGGaGGCGugGCCGggaccugaggcgACCGCg -3'
miRNA:   3'- -GCCuuGACUCgUUGUugCGGU------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202702 0.69 0.981669
Target:  5'- aGGGcCUGGGCGua-GgGCCGGCCGUc -3'
miRNA:   3'- gCCUuGACUCGUuguUgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202273 0.66 0.998029
Target:  5'- cCGGAcCUG-GUcGCGGCGCCGuguuCCGa -3'
miRNA:   3'- -GCCUuGACuCGuUGUUGCGGUu---GGCg -5'
13965 5' -51.8 NC_003521.1 + 202135 0.71 0.943207
Target:  5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3'
miRNA:   3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202129 0.69 0.974785
Target:  5'- cCGGGAC-GGGCuugucuucgggGAUGGCGCCGagccagACCGCa -3'
miRNA:   3'- -GCCUUGaCUCG-----------UUGUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202084 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 201763 0.66 0.997663
Target:  5'- aGGAGCUggaaaacuacGAGCcguucgccuCGGCGCCAcacCCGCc -3'
miRNA:   3'- gCCUUGA----------CUCGuu-------GUUGCGGUu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 201632 0.71 0.951767
Target:  5'- gCGGAcGCUgaccaaGAGCGACGACGUgAacgaacuggGCCGCg -3'
miRNA:   3'- -GCCU-UGA------CUCGUUGUUGCGgU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 201553 0.7 0.966186
Target:  5'- gCGaGAGCUGGcGCAGgucgguggcccCGACGCCGGCCa- -3'
miRNA:   3'- -GC-CUUGACU-CGUU-----------GUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 201280 0.66 0.998029
Target:  5'- gCGGGGCgccGGGCggUccucCGCCGAUgGCg -3'
miRNA:   3'- -GCCUUGa--CUCGuuGuu--GCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 200285 0.66 0.996211
Target:  5'- aCGGAACcGGuuuccGCGGCGGCgugcggcggGCCGGCCGg -3'
miRNA:   3'- -GCCUUGaCU-----CGUUGUUG---------CGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 198520 0.66 0.995588
Target:  5'- uGGGACggcuaucGCuGCGGCGUCAGCCaGCu -3'
miRNA:   3'- gCCUUGacu----CGuUGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 198463 0.69 0.977261
Target:  5'- aCGGGccGCUGGG-AAC-ACGUCAgcaGCCGCg -3'
miRNA:   3'- -GCCU--UGACUCgUUGuUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 198363 0.67 0.992208
Target:  5'- uGGGAggGGGCAGCAcCGUCAGaCGCc -3'
miRNA:   3'- gCCUUgaCUCGUUGUuGCGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 197847 0.74 0.841428
Target:  5'- gGGAaggGC-GAGUAGCAGCGCCAGCUcccgaGCu -3'
miRNA:   3'- gCCU---UGaCUCGUUGUUGCGGUUGG-----CG- -5'
13965 5' -51.8 NC_003521.1 + 197579 0.67 0.994091
Target:  5'- gGGAGCUGGcGCuGCuacuCGCCcuucCCGCu -3'
miRNA:   3'- gCCUUGACU-CGuUGuu--GCGGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 197402 0.8 0.560692
Target:  5'- cCGGGACUGGGUGucuggccACGACGCCGAaaGCg -3'
miRNA:   3'- -GCCUUGACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 197018 0.68 0.985403
Target:  5'- cCGGccg-GGGCAGCAgacggugcagGCGCC-GCCGCc -3'
miRNA:   3'- -GCCuugaCUCGUUGU----------UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196789 0.74 0.84942
Target:  5'- gGGAGCUGGGCGgguuGCuGugGCC-GCUGCg -3'
miRNA:   3'- gCCUUGACUCGU----UG-UugCGGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.