miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 196734 0.7 0.959416
Target:  5'- aCGGuGgUG-GCGGCGGCGCCugcACCGUc -3'
miRNA:   3'- -GCCuUgACuCGUUGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196695 0.73 0.879374
Target:  5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3'
miRNA:   3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5'
13965 5' -51.8 NC_003521.1 + 196694 0.66 0.995588
Target:  5'- cCGGccGACccGGGCGACAGCGaCUGucuguGCCGCu -3'
miRNA:   3'- -GCC--UUGa-CUCGUUGUUGC-GGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196634 0.72 0.905848
Target:  5'- gCGGAcuuucucugcGCUcucgcgGAGUaccGACGGCGCCAGCUGCu -3'
miRNA:   3'- -GCCU----------UGA------CUCG---UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 196123 0.67 0.991104
Target:  5'- cCGaGAGCgaGGCGACAGCGCUGA-CGCc -3'
miRNA:   3'- -GC-CUUGacUCGUUGUUGCGGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 195891 0.8 0.5319
Target:  5'- uCGGAGCUGcAGCAACGcgaccagcuggcGgGCCGGCUGCg -3'
miRNA:   3'- -GCCUUGAC-UCGUUGU------------UgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195879 0.67 0.994884
Target:  5'- uCGGGACUGccCAucccCAGCGUCAGCCu- -3'
miRNA:   3'- -GCCUUGACucGUu---GUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 195845 0.67 0.992208
Target:  5'- uGGAGCUGuAGCGuCG--GUUAACCGCu -3'
miRNA:   3'- gCCUUGAC-UCGUuGUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 195539 0.72 0.911892
Target:  5'- aGGGAgUGAGCuuuauaGACGGCGUCAuCCGUc -3'
miRNA:   3'- gCCUUgACUCG------UUGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 193434 0.69 0.972118
Target:  5'- gCGGcAGCUGcGCAACAgcagcagcagACGCCc-CCGCc -3'
miRNA:   3'- -GCC-UUGACuCGUUGU----------UGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 193158 0.67 0.994006
Target:  5'- gCGGGggcgucugcugcuGCUGuugcGCAGCugcCGCCAgaGCCGCc -3'
miRNA:   3'- -GCCU-------------UGACu---CGUUGuu-GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 192808 0.68 0.989879
Target:  5'- uCGGAucGCUG-GCAGCAGcCGCagaAGCCcgGCg -3'
miRNA:   3'- -GCCU--UGACuCGUUGUU-GCGg--UUGG--CG- -5'
13965 5' -51.8 NC_003521.1 + 192662 0.67 0.992208
Target:  5'- aGGcGCUGGaaCAGCAcCGUCAGCUGCu -3'
miRNA:   3'- gCCuUGACUc-GUUGUuGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 192450 0.7 0.955703
Target:  5'- aGGGGCauGGCGGCGGCGCCGguuuccaggACgGCg -3'
miRNA:   3'- gCCUUGacUCGUUGUUGCGGU---------UGgCG- -5'
13965 5' -51.8 NC_003521.1 + 192351 0.66 0.996211
Target:  5'- cCGGcgacGCUGcAGCAcaagcCGACGCCucacaAACCGCc -3'
miRNA:   3'- -GCCu---UGAC-UCGUu----GUUGCGG-----UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 192165 0.66 0.997242
Target:  5'- aGGu-CUGcGGUGuCAGCGCCggUCGCg -3'
miRNA:   3'- gCCuuGAC-UCGUuGUUGCGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191885 0.74 0.822342
Target:  5'- --cAACUGGGCGGCGGCGCCAcguccuucacggacACCGg -3'
miRNA:   3'- gccUUGACUCGUUGUUGCGGU--------------UGGCg -5'
13965 5' -51.8 NC_003521.1 + 191416 0.71 0.938578
Target:  5'- aGGGGCcGGGCGagcGCGGCGCUGucGCCGUc -3'
miRNA:   3'- gCCUUGaCUCGU---UGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191309 0.68 0.98688
Target:  5'- -aGAACUGAGCGucggccaGCAGaCGCU-GCCGCc -3'
miRNA:   3'- gcCUUGACUCGU-------UGUU-GCGGuUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.