miRNA display CGI


Results 141 - 160 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 191136 0.73 0.864812
Target:  5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3'
miRNA:   3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 190960 0.66 0.997623
Target:  5'- aCGGAugaUGGGCAcuuacuuGCAcCGCCAccuggacgGCCGUc -3'
miRNA:   3'- -GCCUug-ACUCGU-------UGUuGCGGU--------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 189045 0.72 0.905848
Target:  5'- gGGGACccagacGAGCAGCAGCGgCAGaugaCGCg -3'
miRNA:   3'- gCCUUGa-----CUCGUUGUUGCgGUUg---GCG- -5'
13965 5' -51.8 NC_003521.1 + 188408 0.71 0.951767
Target:  5'- gCGGcACcgGcAGCGucgGCggUGCCAGCCGCu -3'
miRNA:   3'- -GCCuUGa-C-UCGU---UGuuGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 188236 0.7 0.962908
Target:  5'- gCGGucGC--AGCAGCGGuugaGCCAGCCGCa -3'
miRNA:   3'- -GCCu-UGacUCGUUGUUg---CGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 187383 0.68 0.989879
Target:  5'- aCGG---UGAGCAGCGGCaacaGCCu-CCGCa -3'
miRNA:   3'- -GCCuugACUCGUUGUUG----CGGuuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 187135 0.7 0.955703
Target:  5'- -uGAGCUGGGcCGACGagccgugcugcACGCC-GCCGCu -3'
miRNA:   3'- gcCUUGACUC-GUUGU-----------UGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 186939 0.66 0.998029
Target:  5'- gCGuGACUGucguugcGCAGCAggcacucguacACGCCGGCCGa -3'
miRNA:   3'- -GCcUUGACu------CGUUGU-----------UGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 186916 0.7 0.964245
Target:  5'- gGGGGCcccugugucaaccgGAGgAGCAGC-CCGACCGCu -3'
miRNA:   3'- gCCUUGa-------------CUCgUUGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 186764 0.71 0.937624
Target:  5'- cCGGAACcccaucuGCGACGaCCAACCGCa -3'
miRNA:   3'- -GCCUUGacucgu-UGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 186630 0.74 0.857217
Target:  5'- aCGGGGCgauGGUuauCGACGCCuGCCGCa -3'
miRNA:   3'- -GCCUUGac-UCGuu-GUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 184101 0.66 0.995521
Target:  5'- uCGGAccGCUgaugaacGAGUAAUAAUGCgCGGCCGa -3'
miRNA:   3'- -GCCU--UGA-------CUCGUUGUUGCG-GUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 181214 0.66 0.997242
Target:  5'- aGGAACU--GCG--AugGCCGAUCGCc -3'
miRNA:   3'- gCCUUGAcuCGUugUugCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 180762 0.68 0.985403
Target:  5'- aCGGGcucuCUGGGCAACGGCaCCAACa-- -3'
miRNA:   3'- -GCCUu---GACUCGUUGUUGcGGUUGgcg -5'
13965 5' -51.8 NC_003521.1 + 178952 0.67 0.993202
Target:  5'- uGGuacCUGAGCGGCcGCGaCCAcCCGg -3'
miRNA:   3'- gCCuu-GACUCGUUGuUGC-GGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 178448 0.69 0.979553
Target:  5'- uGGc-CUGGGUGA--ACGUCAACCGCg -3'
miRNA:   3'- gCCuuGACUCGUUguUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 175597 0.73 0.87147
Target:  5'- gCGGcagugacGACUGAGCGACAACuacCCuccACCGCu -3'
miRNA:   3'- -GCC-------UUGACUCGUUGUUGc--GGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 174504 0.68 0.987037
Target:  5'- uGGAGgaGAGUAGCGucaugaucgcuCGCCAACCcCa -3'
miRNA:   3'- gCCUUgaCUCGUUGUu----------GCGGUUGGcG- -5'
13965 5' -51.8 NC_003521.1 + 172893 0.69 0.979553
Target:  5'- gGGGGCgcgUGAGgacCGAgGACGUgGACCGCa -3'
miRNA:   3'- gCCUUG---ACUC---GUUgUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 169213 0.72 0.911892
Target:  5'- gGGAGCgacGGCGACAGCGgCGGCCcuGCc -3'
miRNA:   3'- gCCUUGac-UCGUUGUUGCgGUUGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.