miRNA display CGI


Results 41 - 60 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 197402 0.8 0.560692
Target:  5'- cCGGGACUGGGUGucuggccACGACGCCGAaaGCg -3'
miRNA:   3'- -GCCUUGACUCGU-------UGUUGCGGUUggCG- -5'
13965 5' -51.8 NC_003521.1 + 83762 0.8 0.5319
Target:  5'- uGGGACaGGGUGGCGGCGCCccccGCCGCg -3'
miRNA:   3'- gCCUUGaCUCGUUGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56896 0.8 0.5319
Target:  5'- gCGaGAGCUGGccgucGCGACAGCGCCGcagcACCGCc -3'
miRNA:   3'- -GC-CUUGACU-----CGUUGUUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 157971 0.8 0.522093
Target:  5'- aCGGcGCUG-GUAGCGACGCC-GCCGCc -3'
miRNA:   3'- -GCCuUGACuCGUUGUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 37212 0.81 0.512356
Target:  5'- cCGGGACUGuucuucAGCGGCGACGCgcuCAACUGCa -3'
miRNA:   3'- -GCCUUGAC------UCGUUGUUGCG---GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 29229 0.77 0.723279
Target:  5'- uGGAgauccucuACUGGGCcuccagccgcGGCGACGaCCAGCCGCu -3'
miRNA:   3'- gCCU--------UGACUCG----------UUGUUGC-GGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 165642 0.77 0.723279
Target:  5'- aCGGugUUGAGCAGCAgcACGCCGcGCgGCa -3'
miRNA:   3'- -GCCuuGACUCGUUGU--UGCGGU-UGgCG- -5'
13965 5' -51.8 NC_003521.1 + 148415 0.74 0.841428
Target:  5'- gGGAGCcauggugcGGGCGGCcGCGCCGGCgGCu -3'
miRNA:   3'- gCCUUGa-------CUCGUUGuUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 128619 0.74 0.840618
Target:  5'- uCGGGGCUGAGCAcgaaguuGCcguagguggccGGCGCCGacACCGUc -3'
miRNA:   3'- -GCCUUGACUCGU-------UG-----------UUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226370 0.74 0.833247
Target:  5'- gGGAGC--GGCGGCuGACGCC-GCCGCa -3'
miRNA:   3'- gCCUUGacUCGUUG-UUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 191885 0.74 0.822342
Target:  5'- --cAACUGGGCGGCGGCGCCAcguccuucacggacACCGg -3'
miRNA:   3'- gccUUGACUCGUUGUUGCGGU--------------UGGCg -5'
13965 5' -51.8 NC_003521.1 + 59357 0.75 0.816349
Target:  5'- ---cGCUGcaGGCGGC-GCGCCAGCCGCu -3'
miRNA:   3'- gccuUGAC--UCGUUGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101492 0.75 0.816349
Target:  5'- aGGuGCUcGAGCAGCGGCGgCCAGaCGCg -3'
miRNA:   3'- gCCuUGA-CUCGUUGUUGC-GGUUgGCG- -5'
13965 5' -51.8 NC_003521.1 + 166781 0.75 0.798789
Target:  5'- uCGGGACaggcgGGGUcgGACGAUGCCGccGCCGCu -3'
miRNA:   3'- -GCCUUGa----CUCG--UUGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 100238 0.75 0.78978
Target:  5'- uGGAGCUGGGCGaggugcccgACGAcgagcugucgcCGCCGccGCCGCa -3'
miRNA:   3'- gCCUUGACUCGU---------UGUU-----------GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 113583 0.75 0.787961
Target:  5'- uGGGGCUGGGCcucgggggcaacgggGGCGGCGCucugcucaugcagcuCAGCCGCg -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCG---------------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226810 0.75 0.78705
Target:  5'- aGGAcCUGAcGguACAGCGCCAugggguccucgcccGCCGCc -3'
miRNA:   3'- gCCUuGACU-CguUGUUGCGGU--------------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202084 0.76 0.77135
Target:  5'- cCGGGACgGGGCc-CGGCGCCucuaauACCGCa -3'
miRNA:   3'- -GCCUUGaCUCGuuGUUGCGGu-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 146666 0.76 0.761946
Target:  5'- aGGAGgacGGCAACGAaGCCGACCGCa -3'
miRNA:   3'- gCCUUgacUCGUUGUUgCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 114824 0.76 0.732108
Target:  5'- uGGAGCUGGGCAcgcGCAccgugcucaugcuGCGCCuuagcgugcuGCCGCu -3'
miRNA:   3'- gCCUUGACUCGU---UGU-------------UGCGGu---------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.