Results 81 - 100 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 140899 | 0.73 | 0.879374 |
Target: 5'- gCGGGAUUacGCccugcGCAACGCCGAUCGCg -3' miRNA: 3'- -GCCUUGAcuCGu----UGUUGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 196695 | 0.73 | 0.879374 |
Target: 5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3' miRNA: 3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 141952 | 0.73 | 0.879374 |
Target: 5'- uGGGcgcccaccuGCUGGGCGACgAGCGUCAggaGCUGCa -3' miRNA: 3'- gCCU---------UGACUCGUUG-UUGCGGU---UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 164426 | 0.73 | 0.879374 |
Target: 5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3' miRNA: 3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 111197 | 0.73 | 0.88633 |
Target: 5'- gCGGAcgguggGCUGGGCGAUGGCGCCGGaaaGUg -3' miRNA: 3'- -GCCU------UGACUCGUUGUUGCGGUUgg-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 65635 | 0.73 | 0.88905 |
Target: 5'- aGGAGCUGAcgcGCGccagccaggaccuggAgAACGCCAuCCGCg -3' miRNA: 3'- gCCUUGACU---CGU---------------UgUUGCGGUuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 109494 | 0.73 | 0.893063 |
Target: 5'- aGGcGCUccagcGAGUggUcGCGCCGGCCGCu -3' miRNA: 3'- gCCuUGA-----CUCGuuGuUGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 142280 | 0.73 | 0.870005 |
Target: 5'- uCGG-GCUGGgacccgccgccgcuGCAGCGGC-CCAGCCGCg -3' miRNA: 3'- -GCCuUGACU--------------CGUUGUUGcGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 191136 | 0.73 | 0.864812 |
Target: 5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3' miRNA: 3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 124531 | 0.73 | 0.864812 |
Target: 5'- uGGAGCUGucCucCAGCGCCAGCUuGCg -3' miRNA: 3'- gCCUUGACucGuuGUUGCGGUUGG-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 128619 | 0.74 | 0.840618 |
Target: 5'- uCGGGGCUGAGCAcgaaguuGCcguagguggccGGCGCCGacACCGUc -3' miRNA: 3'- -GCCUUGACUCGU-------UG-----------UUGCGGU--UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 148415 | 0.74 | 0.841428 |
Target: 5'- gGGAGCcauggugcGGGCGGCcGCGCCGGCgGCu -3' miRNA: 3'- gCCUUGa-------CUCGUUGuUGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 116824 | 0.74 | 0.848629 |
Target: 5'- gGGuGCUGcAGCGguuuccagaccugACGGcCGCCGACCGCg -3' miRNA: 3'- gCCuUGAC-UCGU-------------UGUU-GCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 70867 | 0.74 | 0.84942 |
Target: 5'- aGGAGgaGAGCAACGACGaCAuAUCGCc -3' miRNA: 3'- gCCUUgaCUCGUUGUUGCgGU-UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 91523 | 0.74 | 0.84942 |
Target: 5'- uGGAGgUGGGCGG-AGCGUCGACCGg -3' miRNA: 3'- gCCUUgACUCGUUgUUGCGGUUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 30997 | 0.74 | 0.84942 |
Target: 5'- uCGGGAUgGGGCGACGacgGCGCCGGCgaggaCGCg -3' miRNA: 3'- -GCCUUGaCUCGUUGU---UGCGGUUG-----GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 163775 | 0.74 | 0.857217 |
Target: 5'- gCGGcAACaacGGUAGCGGCGCCAccACCGCc -3' miRNA: 3'- -GCC-UUGac-UCGUUGUUGCGGU--UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 208597 | 0.74 | 0.857217 |
Target: 5'- aCGGcGACUGAGUuuGCGGCGgCCAuagccagucACCGCg -3' miRNA: 3'- -GCC-UUGACUCGu-UGUUGC-GGU---------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 34493 | 0.73 | 0.864812 |
Target: 5'- gCGGaAGCaGAGCAGCgAGCGCagguagCGGCCGCg -3' miRNA: 3'- -GCC-UUGaCUCGUUG-UUGCG------GUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 119586 | 0.73 | 0.893063 |
Target: 5'- aGGAacacGCUGGGCGgcggguGCAGCGUCucguGCUGCa -3' miRNA: 3'- gCCU----UGACUCGU------UGUUGCGGu---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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