miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 63959 0.72 0.899571
Target:  5'- uGGAGCUGcuGGC-GCGGCGCCAuaACCa- -3'
miRNA:   3'- gCCUUGAC--UCGuUGUUGCGGU--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 2706 0.72 0.899571
Target:  5'- cCGGAACgccacucGuGCGGgAGCGCCGucACCGCc -3'
miRNA:   3'- -GCCUUGa------CuCGUUgUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 166453 0.72 0.903989
Target:  5'- aGGGcgagccgucgccgcACUGGccguagccgcGCAGCAGCGCCAuccagcggggcGCCGCg -3'
miRNA:   3'- gCCU--------------UGACU----------CGUUGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117946 0.72 0.905848
Target:  5'- aGGAGgaGAGCAucaucGCGGCGgCGGCCaGCa -3'
miRNA:   3'- gCCUUgaCUCGU-----UGUUGCgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 196634 0.72 0.905848
Target:  5'- gCGGAcuuucucugcGCUcucgcgGAGUaccGACGGCGCCAGCUGCu -3'
miRNA:   3'- -GCCU----------UGA------CUCG---UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 164426 0.73 0.879374
Target:  5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3'
miRNA:   3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 141952 0.73 0.879374
Target:  5'- uGGGcgcccaccuGCUGGGCGACgAGCGUCAggaGCUGCa -3'
miRNA:   3'- gCCU---------UGACUCGUUG-UUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 91523 0.74 0.84942
Target:  5'- uGGAGgUGGGCGG-AGCGUCGACCGg -3'
miRNA:   3'- gCCUUgACUCGUUgUUGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 30997 0.74 0.84942
Target:  5'- uCGGGAUgGGGCGACGacgGCGCCGGCgaggaCGCg -3'
miRNA:   3'- -GCCUUGaCUCGUUGU---UGCGGUUG-----GCG- -5'
13965 5' -51.8 NC_003521.1 + 163775 0.74 0.857217
Target:  5'- gCGGcAACaacGGUAGCGGCGCCAccACCGCc -3'
miRNA:   3'- -GCC-UUGac-UCGUUGUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 208597 0.74 0.857217
Target:  5'- aCGGcGACUGAGUuuGCGGCGgCCAuagccagucACCGCg -3'
miRNA:   3'- -GCC-UUGACUCGu-UGUUGC-GGU---------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 34493 0.73 0.864812
Target:  5'- gCGGaAGCaGAGCAGCgAGCGCagguagCGGCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUG-UUGCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 124531 0.73 0.864812
Target:  5'- uGGAGCUGucCucCAGCGCCAGCUuGCg -3'
miRNA:   3'- gCCUUGACucGuuGUUGCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 191136 0.73 0.864812
Target:  5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3'
miRNA:   3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5'
13965 5' -51.8 NC_003521.1 + 142280 0.73 0.870005
Target:  5'- uCGG-GCUGGgacccgccgccgcuGCAGCGGC-CCAGCCGCg -3'
miRNA:   3'- -GCCuUGACU--------------CGUUGUUGcGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 175597 0.73 0.87147
Target:  5'- gCGGcagugacGACUGAGCGACAACuacCCuccACCGCu -3'
miRNA:   3'- -GCC-------UUGACUCGUUGUUGc--GGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 31909 0.73 0.879374
Target:  5'- aGGAACUGcGGCAgGCAGCGCgCGAugacUCGCg -3'
miRNA:   3'- gCCUUGAC-UCGU-UGUUGCG-GUU----GGCG- -5'
13965 5' -51.8 NC_003521.1 + 74575 0.73 0.879374
Target:  5'- gCGGcGACgGAGCGGCGGCGCgGcgucCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUUGCGgUu---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 140899 0.73 0.879374
Target:  5'- gCGGGAUUacGCccugcGCAACGCCGAUCGCg -3'
miRNA:   3'- -GCCUUGAcuCGu----UGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196695 0.73 0.879374
Target:  5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3'
miRNA:   3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.