Results 121 - 140 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 17036 | 0.72 | 0.928614 |
Target: 5'- aGGAGCgacgacaacgGcAGCAccaGCAGCGCCGacgauACCGCu -3' miRNA: 3'- gCCUUGa---------C-UCGU---UGUUGCGGU-----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 142126 | 0.72 | 0.928614 |
Target: 5'- uGGAGCUGgaGGCgGACGACGCgGAaaaCGCc -3' miRNA: 3'- gCCUUGAC--UCG-UUGUUGCGgUUg--GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 86307 | 0.72 | 0.89893 |
Target: 5'- gGGaAACUGGGCGugAuucuggcACGUCAGCCGg -3' miRNA: 3'- gCC-UUGACUCGUugU-------UGCGGUUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 60327 | 0.73 | 0.893063 |
Target: 5'- aCGGcGCUGAuGCAGCcg-GCCAACCuGCg -3' miRNA: 3'- -GCCuUGACU-CGUUGuugCGGUUGG-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 26531 | 0.73 | 0.893063 |
Target: 5'- aCGGAGCcaagGAGCGuCGACGCUuuauGCCaGCg -3' miRNA: 3'- -GCCUUGa---CUCGUuGUUGCGGu---UGG-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 191136 | 0.73 | 0.864812 |
Target: 5'- uGGcaGGCUGAcgGCGACAGCGCCGcGCuCGCc -3' miRNA: 3'- gCC--UUGACU--CGUUGUUGCGGU-UG-GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 142280 | 0.73 | 0.870005 |
Target: 5'- uCGG-GCUGGgacccgccgccgcuGCAGCGGC-CCAGCCGCg -3' miRNA: 3'- -GCCuUGACU--------------CGUUGUUGcGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 175597 | 0.73 | 0.87147 |
Target: 5'- gCGGcagugacGACUGAGCGACAACuacCCuccACCGCu -3' miRNA: 3'- -GCC-------UUGACUCGUUGUUGc--GGu--UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 31909 | 0.73 | 0.879374 |
Target: 5'- aGGAACUGcGGCAgGCAGCGCgCGAugacUCGCg -3' miRNA: 3'- gCCUUGAC-UCGU-UGUUGCG-GUU----GGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 74575 | 0.73 | 0.879374 |
Target: 5'- gCGGcGACgGAGCGGCGGCGCgGcgucCCGCg -3' miRNA: 3'- -GCC-UUGaCUCGUUGUUGCGgUu---GGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 140899 | 0.73 | 0.879374 |
Target: 5'- gCGGGAUUacGCccugcGCAACGCCGAUCGCg -3' miRNA: 3'- -GCCUUGAcuCGu----UGUUGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 196695 | 0.73 | 0.879374 |
Target: 5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3' miRNA: 3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 56706 | 0.72 | 0.928614 |
Target: 5'- gCGGAugacGCUGGucGCGuCGACGUCgAGCCGCg -3' miRNA: 3'- -GCCU----UGACU--CGUuGUUGCGG-UUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 141952 | 0.73 | 0.879374 |
Target: 5'- uGGGcgcccaccuGCUGGGCGACgAGCGUCAggaGCUGCa -3' miRNA: 3'- gCCU---------UGACUCGUUG-UUGCGGU---UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 164426 | 0.73 | 0.879374 |
Target: 5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3' miRNA: 3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 111197 | 0.73 | 0.88633 |
Target: 5'- gCGGAcgguggGCUGGGCGAUGGCGCCGGaaaGUg -3' miRNA: 3'- -GCCU------UGACUCGUUGUUGCGGUUgg-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 65635 | 0.73 | 0.88905 |
Target: 5'- aGGAGCUGAcgcGCGccagccaggaccuggAgAACGCCAuCCGCg -3' miRNA: 3'- gCCUUGACU---CGU---------------UgUUGCGGUuGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 109494 | 0.73 | 0.893063 |
Target: 5'- aGGcGCUccagcGAGUggUcGCGCCGGCCGCu -3' miRNA: 3'- gCCuUGA-----CUCGuuGuUGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 119586 | 0.73 | 0.893063 |
Target: 5'- aGGAacacGCUGGGCGgcggguGCAGCGUCucguGCUGCa -3' miRNA: 3'- gCCU----UGACUCGU------UGUUGCGGu---UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 103326 | 0.73 | 0.893063 |
Target: 5'- aGGcGCUGAcGCGcCAGCGCCGugCGg -3' miRNA: 3'- gCCuUGACU-CGUuGUUGCGGUugGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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