miRNA display CGI


Results 141 - 160 of 622 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 23884 0.72 0.911298
Target:  5'- uGGGuccgGGGCAACAGCGUaugggguCGACCGCc -3'
miRNA:   3'- gCCUuga-CUCGUUGUUGCG-------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 40468 0.72 0.905848
Target:  5'- gCGGAACgGAuagauguguccGCGGC-GCGCCAcggcGCCGCa -3'
miRNA:   3'- -GCCUUGaCU-----------CGUUGuUGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 109494 0.73 0.893063
Target:  5'- aGGcGCUccagcGAGUggUcGCGCCGGCCGCu -3'
miRNA:   3'- gCCuUGA-----CUCGuuGuUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 65635 0.73 0.88905
Target:  5'- aGGAGCUGAcgcGCGccagccaggaccuggAgAACGCCAuCCGCg -3'
miRNA:   3'- gCCUUGACU---CGU---------------UgUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 111197 0.73 0.88633
Target:  5'- gCGGAcgguggGCUGGGCGAUGGCGCCGGaaaGUg -3'
miRNA:   3'- -GCCU------UGACUCGUUGUUGCGGUUgg-CG- -5'
13965 5' -51.8 NC_003521.1 + 164426 0.73 0.879374
Target:  5'- cCGccGCUGGuGCuAGCAGCGCCAccgcgGCCGCg -3'
miRNA:   3'- -GCcuUGACU-CG-UUGUUGCGGU-----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 141952 0.73 0.879374
Target:  5'- uGGGcgcccaccuGCUGGGCGACgAGCGUCAggaGCUGCa -3'
miRNA:   3'- gCCU---------UGACUCGUUG-UUGCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 196695 0.73 0.879374
Target:  5'- uCGGAGgagGAGCAGCGACGgCCGACUucaccgGCg -3'
miRNA:   3'- -GCCUUga-CUCGUUGUUGC-GGUUGG------CG- -5'
13965 5' -51.8 NC_003521.1 + 140899 0.73 0.879374
Target:  5'- gCGGGAUUacGCccugcGCAACGCCGAUCGCg -3'
miRNA:   3'- -GCCUUGAcuCGu----UGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 74575 0.73 0.879374
Target:  5'- gCGGcGACgGAGCGGCGGCGCgGcgucCCGCg -3'
miRNA:   3'- -GCC-UUGaCUCGUUGUUGCGgUu---GGCG- -5'
13965 5' -51.8 NC_003521.1 + 119586 0.73 0.893063
Target:  5'- aGGAacacGCUGGGCGgcggguGCAGCGUCucguGCUGCa -3'
miRNA:   3'- gCCU----UGACUCGU------UGUUGCGGu---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 103326 0.73 0.893063
Target:  5'- aGGcGCUGAcGCGcCAGCGCCGugCGg -3'
miRNA:   3'- gCCuUGACU-CGUuGUUGCGGUugGCg -5'
13965 5' -51.8 NC_003521.1 + 196634 0.72 0.905848
Target:  5'- gCGGAcuuucucugcGCUcucgcgGAGUaccGACGGCGCCAGCUGCu -3'
miRNA:   3'- -GCCU----------UGA------CUCG---UUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117946 0.72 0.905848
Target:  5'- aGGAGgaGAGCAucaucGCGGCGgCGGCCaGCa -3'
miRNA:   3'- gCCUUgaCUCGU-----UGUUGCgGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 166453 0.72 0.903989
Target:  5'- aGGGcgagccgucgccgcACUGGccguagccgcGCAGCAGCGCCAuccagcggggcGCCGCg -3'
miRNA:   3'- gCCU--------------UGACU----------CGUUGUUGCGGU-----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 2706 0.72 0.899571
Target:  5'- cCGGAACgccacucGuGCGGgAGCGCCGucACCGCc -3'
miRNA:   3'- -GCCUUGa------CuCGUUgUUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 63959 0.72 0.899571
Target:  5'- uGGAGCUGcuGGC-GCGGCGCCAuaACCa- -3'
miRNA:   3'- gCCUUGAC--UCGuUGUUGCGGU--UGGcg -5'
13965 5' -51.8 NC_003521.1 + 86307 0.72 0.89893
Target:  5'- gGGaAACUGGGCGugAuucuggcACGUCAGCCGg -3'
miRNA:   3'- gCC-UUGACUCGUugU-------UGCGGUUGGCg -5'
13965 5' -51.8 NC_003521.1 + 60327 0.73 0.893063
Target:  5'- aCGGcGCUGAuGCAGCcg-GCCAACCuGCg -3'
miRNA:   3'- -GCCuUGACU-CGUUGuugCGGUUGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 26531 0.73 0.893063
Target:  5'- aCGGAGCcaagGAGCGuCGACGCUuuauGCCaGCg -3'
miRNA:   3'- -GCCUUGa---CUCGUuGUUGCGGu---UGG-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.