miRNA display CGI


Results 61 - 80 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 225867 0.73 0.872199
Target:  5'- uGGGGCUGcaGGCGGCcgAGCGCgaGGCCGCc -3'
miRNA:   3'- gCCUUGAC--UCGUUG--UUGCGg-UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 19339 0.73 0.879374
Target:  5'- gCGGAACgacAGCGuCAGCGUCugcGCCGCg -3'
miRNA:   3'- -GCCUUGac-UCGUuGUUGCGGu--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 91972 0.75 0.780631
Target:  5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43832 0.75 0.816349
Target:  5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 197847 0.74 0.841428
Target:  5'- gGGAaggGC-GAGUAGCAGCGCCAGCUcccgaGCu -3'
miRNA:   3'- gCCU---UGaCUCGUUGUUGCGGUUGG-----CG- -5'
13965 5' -51.8 NC_003521.1 + 186630 0.74 0.857217
Target:  5'- aCGGGGCgauGGUuauCGACGCCuGCCGCa -3'
miRNA:   3'- -GCCUUGac-UCGuu-GUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218673 0.73 0.864812
Target:  5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3'
miRNA:   3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 202135 0.71 0.943207
Target:  5'- aGcGACUGGGCAGCAcgacgcccagaaACaGCCAcCCGCa -3'
miRNA:   3'- gCcUUGACUCGUUGU------------UG-CGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 97039 0.71 0.938578
Target:  5'- cCGcuGCUGccGGCGGCGACGgCGACCGUu -3'
miRNA:   3'- -GCcuUGAC--UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 65561 0.73 0.88633
Target:  5'- uCGGAGCU--GCGACAGCGCCc-CCaGCa -3'
miRNA:   3'- -GCCUUGAcuCGUUGUUGCGGuuGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 109303 0.73 0.893063
Target:  5'- uGGAcGCUG-GCAACAACGUgGugguacccucGCCGCg -3'
miRNA:   3'- gCCU-UGACuCGUUGUUGCGgU----------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 85679 0.72 0.899571
Target:  5'- gGGGGCUGGGCAcCGGagGCCuGCUGCc -3'
miRNA:   3'- gCCUUGACUCGUuGUUg-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 56705 0.72 0.899571
Target:  5'- uCGGAcCUGGGCcACGAgGCggccuuCGACCGCg -3'
miRNA:   3'- -GCCUuGACUCGuUGUUgCG------GUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 169213 0.72 0.911892
Target:  5'- gGGAGCgacGGCGACAGCGgCGGCCcuGCc -3'
miRNA:   3'- gCCUUGac-UCGUUGUUGCgGUUGG--CG- -5'
13965 5' -51.8 NC_003521.1 + 22753 0.72 0.911892
Target:  5'- uGGucaugacGCUGAaaccuuGCGAUAGCGCCAcCCGCu -3'
miRNA:   3'- gCCu------UGACU------CGUUGUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101247 0.72 0.928614
Target:  5'- --cAGC-GAGCGAgAACGCCGugCGCg -3'
miRNA:   3'- gccUUGaCUCGUUgUUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 58690 0.71 0.933714
Target:  5'- cCGGcAGCgcuGCGGCuuCGUCAACCGCc -3'
miRNA:   3'- -GCC-UUGacuCGUUGuuGCGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.