Results 81 - 100 of 622 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 5' | -51.8 | NC_003521.1 | + | 226641 | 0.73 | 0.88633 |
Target: 5'- aCGGccCU--GCGGCGGCGUCAGCCGCc -3' miRNA: 3'- -GCCuuGAcuCGUUGUUGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 53308 | 0.73 | 0.895694 |
Target: 5'- aGGAGCUGGGCuggacccacuucgacAGCGGCGgCGACCu- -3' miRNA: 3'- gCCUUGACUCG---------------UUGUUGCgGUUGGcg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 79909 | 0.72 | 0.899571 |
Target: 5'- uCGccGCUGcAGCAGCAgacgACGCCGaggcGCCGCg -3' miRNA: 3'- -GCcuUGAC-UCGUUGU----UGCGGU----UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 189045 | 0.72 | 0.905848 |
Target: 5'- gGGGACccagacGAGCAGCAGCGgCAGaugaCGCg -3' miRNA: 3'- gCCUUGa-----CUCGUUGUUGCgGUUg---GCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 118358 | 0.72 | 0.911892 |
Target: 5'- uGGucgUGGGCGACGGCGCC-GCCGa -3' miRNA: 3'- gCCuugACUCGUUGUUGCGGuUGGCg -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 101247 | 0.72 | 0.928614 |
Target: 5'- --cAGC-GAGCGAgAACGCCGugCGCg -3' miRNA: 3'- gccUUGaCUCGUUgUUGCGGUugGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 58690 | 0.71 | 0.933714 |
Target: 5'- cCGGcAGCgcuGCGGCuuCGUCAACCGCc -3' miRNA: 3'- -GCC-UUGacuCGUUGuuGCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 218673 | 0.73 | 0.864812 |
Target: 5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3' miRNA: 3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 186630 | 0.74 | 0.857217 |
Target: 5'- aCGGGGCgauGGUuauCGACGCCuGCCGCa -3' miRNA: 3'- -GCCUUGac-UCGuu-GUUGCGGuUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 197847 | 0.74 | 0.841428 |
Target: 5'- gGGAaggGC-GAGUAGCAGCGCCAGCUcccgaGCu -3' miRNA: 3'- gCCU---UGaCUCGUUGUUGCGGUUGG-----CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 50558 | 0.71 | 0.951767 |
Target: 5'- aGGAGC-GAGguGCGGCGgCAGCaGCg -3' miRNA: 3'- gCCUUGaCUCguUGUUGCgGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 29136 | 0.71 | 0.951767 |
Target: 5'- cCGuGAGCUuGGGCGACucgaccgugccGCGCC-GCCGCa -3' miRNA: 3'- -GC-CUUGA-CUCGUUGu----------UGCGGuUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 235786 | 0.71 | 0.951767 |
Target: 5'- cCGGcauguuucGCggGGGCGGCGugcccCGCCGGCCGCg -3' miRNA: 3'- -GCCu-------UGa-CUCGUUGUu----GCGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 100005 | 0.7 | 0.955703 |
Target: 5'- cCGGGccaaaugagcgGCUGGgugcGCGACGACGCCugcGACCuGCa -3' miRNA: 3'- -GCCU-----------UGACU----CGUUGUUGCGG---UUGG-CG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 186916 | 0.7 | 0.964245 |
Target: 5'- gGGGGCcccugugucaaccgGAGgAGCAGC-CCGACCGCu -3' miRNA: 3'- gCCUUGa-------------CUCgUUGUUGcGGUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 38752 | 0.79 | 0.581808 |
Target: 5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3' miRNA: 3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 30495 | 0.78 | 0.642786 |
Target: 5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3' miRNA: 3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 196417 | 0.76 | 0.761946 |
Target: 5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3' miRNA: 3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 91972 | 0.75 | 0.780631 |
Target: 5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3' miRNA: 3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5' |
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13965 | 5' | -51.8 | NC_003521.1 | + | 43832 | 0.75 | 0.816349 |
Target: 5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3' miRNA: 3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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