miRNA display CGI


Results 101 - 120 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 43432 0.7 0.955703
Target:  5'- uGGcGCUcgugcGGCAGCAGCGCCAccAgCGCg -3'
miRNA:   3'- gCCuUGAc----UCGUUGUUGCGGU--UgGCG- -5'
13965 5' -51.8 NC_003521.1 + 201553 0.7 0.966186
Target:  5'- gCGaGAGCUGGcGCAGgucgguggcccCGACGCCGGCCa- -3'
miRNA:   3'- -GC-CUUGACU-CGUU-----------GUUGCGGUUGGcg -5'
13965 5' -51.8 NC_003521.1 + 33429 0.7 0.966186
Target:  5'- uGGAACguggccGAGgcCGACGAgGCCAACgGCu -3'
miRNA:   3'- gCCUUGa-----CUC--GUUGUUgCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 51054 0.7 0.969254
Target:  5'- gGGAAcCUGGGUAGgAACGCUAAaugaCGUg -3'
miRNA:   3'- gCCUU-GACUCGUUgUUGCGGUUg---GCG- -5'
13965 5' -51.8 NC_003521.1 + 218920 0.7 0.969254
Target:  5'- aCGGuGgaGAGgGACGAggcgcCGCCGGCCGUg -3'
miRNA:   3'- -GCCuUgaCUCgUUGUU-----GCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 189045 0.72 0.905848
Target:  5'- gGGGACccagacGAGCAGCAGCGgCAGaugaCGCg -3'
miRNA:   3'- gCCUUGa-----CUCGUUGUUGCgGUUg---GCG- -5'
13965 5' -51.8 NC_003521.1 + 79909 0.72 0.899571
Target:  5'- uCGccGCUGcAGCAGCAgacgACGCCGaggcGCCGCg -3'
miRNA:   3'- -GCcuUGAC-UCGUUGU----UGCGGU----UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 38752 0.79 0.581808
Target:  5'- uCGGGGCUcGAGUAAgAACGCCGgcgcccACCGCc -3'
miRNA:   3'- -GCCUUGA-CUCGUUgUUGCGGU------UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 30495 0.78 0.642786
Target:  5'- gCGGAcCUGcAGC-GCGACGCCAACgGCc -3'
miRNA:   3'- -GCCUuGAC-UCGuUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 196417 0.76 0.761946
Target:  5'- aGGAGCcacaUGAGaaCGGCAGCGCCAGCaGCg -3'
miRNA:   3'- gCCUUG----ACUC--GUUGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 91972 0.75 0.780631
Target:  5'- uCGGAAg-GAGCGGC-ACGCaGACCGCa -3'
miRNA:   3'- -GCCUUgaCUCGUUGuUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 43832 0.75 0.816349
Target:  5'- aGGAGCgGuGCuugacGCGGCGCCGGCgGCg -3'
miRNA:   3'- gCCUUGaCuCGu----UGUUGCGGUUGgCG- -5'
13965 5' -51.8 NC_003521.1 + 197847 0.74 0.841428
Target:  5'- gGGAaggGC-GAGUAGCAGCGCCAGCUcccgaGCu -3'
miRNA:   3'- gCCU---UGaCUCGUUGUUGCGGUUGG-----CG- -5'
13965 5' -51.8 NC_003521.1 + 186630 0.74 0.857217
Target:  5'- aCGGGGCgauGGUuauCGACGCCuGCCGCa -3'
miRNA:   3'- -GCCUUGac-UCGuu-GUUGCGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 218673 0.73 0.864812
Target:  5'- uGGccauGCUGcGCGGCGugGCCGaguACCGCc -3'
miRNA:   3'- gCCu---UGACuCGUUGUugCGGU---UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 117375 0.73 0.872199
Target:  5'- gCGGcGGCUGAGCGGCGgagGCGgCCucguCCGCu -3'
miRNA:   3'- -GCC-UUGACUCGUUGU---UGC-GGuu--GGCG- -5'
13965 5' -51.8 NC_003521.1 + 141135 0.73 0.879374
Target:  5'- aGGg---GGGCGGCGGCGCCucggccgaGACCGCg -3'
miRNA:   3'- gCCuugaCUCGUUGUUGCGG--------UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 125626 0.73 0.885644
Target:  5'- gCGGAcuGCgacGAGCGcggacgaACAGCGUgGGCCGCg -3'
miRNA:   3'- -GCCU--UGa--CUCGU-------UGUUGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226641 0.73 0.88633
Target:  5'- aCGGccCU--GCGGCGGCGUCAGCCGCc -3'
miRNA:   3'- -GCCuuGAcuCGUUGUUGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 53308 0.73 0.895694
Target:  5'- aGGAGCUGGGCuggacccacuucgacAGCGGCGgCGACCu- -3'
miRNA:   3'- gCCUUGACUCG---------------UUGUUGCgGUUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.