miRNA display CGI


Results 121 - 140 of 622 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 5' -51.8 NC_003521.1 + 127053 0.74 0.824885
Target:  5'- gCGGAGCUGGaccacGC-GCAGCGCCAggGCCuGCc -3'
miRNA:   3'- -GCCUUGACU-----CGuUGUUGCGGU--UGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 153837 0.74 0.841428
Target:  5'- aGGuggugGAGCGGCuguGCGCCGugCGCg -3'
miRNA:   3'- gCCuuga-CUCGUUGu--UGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 150855 0.7 0.967438
Target:  5'- gGGGACgugauagugaggagGAGgAGCcGCGCCGccGCCGCc -3'
miRNA:   3'- gCCUUGa-------------CUCgUUGuUGCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 226034 0.7 0.966186
Target:  5'- gCGGcGC-GAGCGcgaGCGGCGCguGCUGCa -3'
miRNA:   3'- -GCCuUGaCUCGU---UGUUGCGguUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 137437 0.7 0.962908
Target:  5'- gGGcAGCUcGGCGGCGGcCGCUgcGGCCGCg -3'
miRNA:   3'- gCC-UUGAcUCGUUGUU-GCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 142926 0.73 0.872199
Target:  5'- uCGcuGCUGA-CGGCGcuGCGCCGACCGCu -3'
miRNA:   3'- -GCcuUGACUcGUUGU--UGCGGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 86957 0.73 0.879374
Target:  5'- cCGGGcaaGGGCGGCAGCGCCAGCgucuucuuucggCGCg -3'
miRNA:   3'- -GCCUugaCUCGUUGUUGCGGUUG------------GCG- -5'
13965 5' -51.8 NC_003521.1 + 65561 0.73 0.88633
Target:  5'- uCGGAGCU--GCGACAGCGCCc-CCaGCa -3'
miRNA:   3'- -GCCUUGAcuCGUUGUUGCGGuuGG-CG- -5'
13965 5' -51.8 NC_003521.1 + 75878 0.73 0.893063
Target:  5'- uCGGcGACUGAGCcgUGGCGCCGcCCGa -3'
miRNA:   3'- -GCC-UUGACUCGuuGUUGCGGUuGGCg -5'
13965 5' -51.8 NC_003521.1 + 85679 0.72 0.899571
Target:  5'- gGGGGCUGGGCAcCGGagGCCuGCUGCc -3'
miRNA:   3'- gCCUUGACUCGUuGUUg-CGGuUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 4645 0.72 0.899571
Target:  5'- gCGGGugAgUGAGCgAGCGggACGCgGGCCGCg -3'
miRNA:   3'- -GCCU--UgACUCG-UUGU--UGCGgUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 169213 0.72 0.911892
Target:  5'- gGGAGCgacGGCGACAGCGgCGGCCcuGCc -3'
miRNA:   3'- gCCUUGac-UCGUUGUUGCgGUUGG--CG- -5'
13965 5' -51.8 NC_003521.1 + 36477 0.72 0.917703
Target:  5'- uCGGggUccaUGuGGCGACAGCGUUugAGCCGCu -3'
miRNA:   3'- -GCCuuG---AC-UCGUUGUUGCGG--UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 101247 0.72 0.928614
Target:  5'- --cAGC-GAGCGAgAACGCCGugCGCg -3'
miRNA:   3'- gccUUGaCUCGUUgUUGCGGUugGCG- -5'
13965 5' -51.8 NC_003521.1 + 240738 0.71 0.938578
Target:  5'- gCGuGAGCUGccGGaGGCGGCGCCugcGACCGCu -3'
miRNA:   3'- -GC-CUUGAC--UCgUUGUUGCGG---UUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 97039 0.71 0.938578
Target:  5'- cCGcuGCUGccGGCGGCGACGgCGACCGUu -3'
miRNA:   3'- -GCcuUGAC--UCGUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 75997 0.71 0.951767
Target:  5'- aGGAGCacgaaugcuguUGAGgAACAGCGgCGGCUGUg -3'
miRNA:   3'- gCCUUG-----------ACUCgUUGUUGCgGUUGGCG- -5'
13965 5' -51.8 NC_003521.1 + 215116 0.71 0.951767
Target:  5'- gCGGAuaggcucucGCcGGGCAGCAAacagcauggaacCGCCGucGCCGCg -3'
miRNA:   3'- -GCCU---------UGaCUCGUUGUU------------GCGGU--UGGCG- -5'
13965 5' -51.8 NC_003521.1 + 223568 0.71 0.951767
Target:  5'- -cGAGCgcuGCGAgGACGCCAuCCGCu -3'
miRNA:   3'- gcCUUGacuCGUUgUUGCGGUuGGCG- -5'
13965 5' -51.8 NC_003521.1 + 85830 0.7 0.955703
Target:  5'- gGGGGCggcGGCGGCGGCGCCucaggcCCGUc -3'
miRNA:   3'- gCCUUGac-UCGUUGUUGCGGuu----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.